Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00240 ATGGAGGTCGAGATTTGCATGAACGGTGCCTGCAAGAATGGCTCTGGCAGAGAGTGGAAGAAAGGGTGGCCTCTGCGATCGGGTGGATTCGCCAAGCTCTGCGATAAGTGCGGATCTGTTTATGCCAATTCAATTTTCTGTGAAAAATTCCACCTACATCAGACTGGCTGGAGAGAGTGCGAGTTTTGCAACAAGTCAATTCACTGCGGTTGCATTGTATCAAGGTTTACTTTTGAGTATCTTGATTTTGGCGGTATAGGTTGCACAACTTGCTGTGTGAAGGCTTCCCAACTTCCTTCGATGCAGGAGACTGGAAACTCTATTAGGTCTGTTAGATCAATAAAAAATAGTGCAGGTGATAGTCATACTGAACATATTGATGATAGACTATTCAATGATGGGTCTAGCAAAGGAAAACTTATGCATATGCGTAGAATTGTTGACGGTGGAGAGTCCAGCCATAAGCCTCAAGCTGAGAGAGGTGACATAGATTCATGTATTGGTCGAAACAGGGAAGACATAAGATTTTCAAATGTGATGAAACCGTCTAATCATTCATCAAAATTTACTACATTAGAAGATAATGGACCAACATGGGGGACCAGAAGTTTGCAGAGGTCAAGTCCACTCAATATTTCTCGGGGAGCCTCATCAGGAAAATCTGTCTTGCCTTCTGGTTTAGAGATTGTAGAAGGGAGATTTGAGGGTAAATCATCATCTTCTTCCTGTCATCAAGGACAAAGACCTGTCTCCATACTGCCTAAACCGATGAACGGGATAACTATGAATATGGAAACAAGCCATGGCATGAATTCCCATGATCGTGTTGCCCGGCCACCAGCTGATGGAAAAGGCAAGAATATGTTACTGTCTCGATACTGGCCCAGGATTACTGATCAAGAGCTAGAGCAGCTGTCTGGAGATTTGAAGTCTACTATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTCGTTCTTCCAAAATCATGCGCTGAGATCCCTAATTATGAGCATGAATTTCAGGCTTACTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGGAAATGAGAGATGTGAAGGGGAACGAGTGGACATTTCAGTTTAGATTTTGGCCGAATAACAACAGTAGGATGTATGTCTTAGAGGGAGTAACCCCCTGCATGCAGACCTTGCAACTAAATGCTGGAGATACTGAAAAAGAAGAAGTGAGAGCGGACTATTGGGCTGAAATGCAACGAGCTCTGATCCACCACTTCTTGGATGCCTCTACTACCTCCAATGTTTTTTCAACAAAGGAGACAACCTTTTCTGGTGCATCTGCAAATATTCAATCAGGAAATAGTTATTGTGATCTTCTGCAGACAAGGAGAGGGAATGGTGAACCTTCCTTAAATGGATCAGAACGTTTTCGTTTGGGTACTGGAATTGCTGATTATCATAAAACTGAAAATTTTGAGATGGCAAACAACGATTTGGTGCAACAACCAAGCTTAGTTTCAGAGAAGAATCAAAATATTGGACATGTGAGTAAGAGGTCGCTCATACATAATGACGATGTCATGGAGTTGAGAGTTACATGGAAAGAAGCTCAAGACTTGCTTTGTCCGGCGCCTAGTGTCAAACCCAGTATTGTAACAATTGAGGACCAAGAATTCGAGGAATATGAGGTAAGTGTGAGTGACACTGTCATGGTTGTGCATCTTGTAATTGTAGTGCTTTGCTATTTCAAGGAACCCCCGGTTTTTGGAAAGACAACTTCAACGAATGCTCACTCATCTGGGTCTTCCAGCTTTGCGTCGAAGGAAATGAGTCCAAAGGATTTAGAAAGTATTCTGGTAACCATTAGAGAAGTTTTGGATGATGATCTTGTTGACCCTACCTATTCATCAGCTGGAGCCACCGCCAAACATTCAAGGCATCGTTCTGGATGCACTTGCATTGTGTGCATTCAACCCCCACGTGGAAGAGGGAGACATAGAACAGCATGCGCTTGCCCTACTTGTGTGATGTATAAGAAGCAACGCCAATCAAAACAAGAAGCAAATGCTACCCAAAAAGATCATATTTATCACGGTGATCAGGGAGGTGGTGCAAGTCTCATGGAGAAAGAGGGAAGCATAAACAAAAGTTGTCTTAAGGTGGGTGAAATCAGGGCAGGACAAATAGACCTCAATAGTCTTCCCAGCCATGATGATGACATGCAAGTGGATGTATGA 2244 0.4314 MEVEICMNGACKNGSGREWKKGWPLRSGGFAKLCDKCGSVYANSIFCEKFHLHQTGWRECEFCNKSIHCGCIVSRFTFEYLDFGGIGCTTCCVKASQLPSMQETGNSIRSVRSIKNSAGDSHTEHIDDRLFNDGSSKGKLMHMRRIVDGGESSHKPQAERGDIDSCIGRNREDIRFSNVMKPSNHSSKFTTLEDNGPTWGTRSLQRSSPLNISRGASSGKSVLPSGLEIVEGRFEGKSSSSSCHQGQRPVSILPKPMNGITMNMETSHGMNSHDRVARPPADGKGKNMLLSRYWPRITDQELEQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEIPNYEHEFQAYFPPISQSEGLPLEMRDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCMQTLQLNAGDTEKEEVRADYWAEMQRALIHHFLDASTTSNVFSTKETTFSGASANIQSGNSYCDLLQTRRGNGEPSLNGSERFRLGTGIADYHKTENFEMANNDLVQQPSLVSEKNQNIGHVSKRSLIHNDDVMELRVTWKEAQDLLCPAPSVKPSIVTIEDQEFEEYEVSVSDTVMVVHLVIVVLCYFKEPPVFGKTTSTNAHSSGSSSFASKEMSPKDLESILVTIREVLDDDLVDPTYSSAGATAKHSRHRSGCTCIVCIQPPRGRGRHRTACACPTCVMYKKQRQSKQEANATQKDHIYHGDQGGGASLMEKEGSINKSCLKVGEIRAGQIDLNSLPSHDDDMQVDV 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00240 747 MobiDBLite consensus disorder prediction 180 221 - -
Spst8g00240 747 Pfam B3 DNA binding domain 317 407 IPR003340 GO:0003677
Spst8g00240 747 SMART B3_2 317 415 IPR003340 GO:0003677
Spst8g00240 747 SUPERFAMILY DNA-binding pseudobarrel domain 314 406 IPR015300 -
Spst8g00240 747 CDD B3_DNA 315 407 IPR003340 GO:0003677
Spst8g00240 747 Gene3D - 295 436 IPR015300 -
Spst8g00240 747 MobiDBLite consensus disorder prediction 235 256 - -
Spst8g00240 747 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 744 - -
Spst8g00240 747 MobiDBLite consensus disorder prediction 180 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00240 Spst-Chr8 2041314 2054646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00240 3 683 B3 DNA Binding Superfamily AT4G32010 38.462 2.73e-144 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst8g00240 B3 5.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00240 K09287 - vra:106763363 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00240 8 2041314 2054646 Spst8g00240 8 2041314 2054646 ECH
Spst6g00210 6 2140259 2146791 Spst8g00240 8 2041314 2054646 PCT