Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00237 ATGCTTATAAATACACGCCCCCCTCTATTGGCCACATCATTCAACATTACAGAAGAGCAAATTAAACTCACATTCCCCTGTTCAACCAAGAAACTTCCAATGGCACTCCATGCATATTCCTTTGTGCTACTTCTTTTCATTGTCATCTTCATAGACATACACTTGAAGGGTGCCTTTGCTGACTATGCCGGTTGGCAGGGTGGTCATGCCACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGGTATGGGAATTTGTACAGTCAGGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCGTGTTTTGAAATGAGGTGTGATGATGACCCAAGATGGTGCAAACCTGGCACCATTGTTGTTACTGCTACAAACTTTTGTCCTCCAAACATTGCGTTGCCAAACAATAATGGTGGTTGGTGCAACCCTCCTCTACAACACTTCGATATGGCAGAACCAGCCTTCCTTCAAATTGCTCAGTATAGAGCTGGAATTGTGCCTGTGGCATTTAGAAGAGTGCCCTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGCCATTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATGTCCATGCAGTCTCCGTCAAAGGGTCCAGAACTAGCTGGCAACCAATGTCAAGAAACTGGGGGCAAAATTGGCAGAGCAACTCCTACCTCAATGGACAAAGCCTCTCTTTTCAAGTTACCGCCAGTGACGGTAGAACTGTGACAGCCTACAACGTGGCACCAGTTAACTGGCAGTTTGGTCAGACCTTCCAAGGGGGTCAGTTTTAG 864 0.4676 MLINTRPPLLATSFNITEEQIKLTFPCSTKKLPMALHAYSFVLLLFIVIFIDIHLKGAFADYAGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMRCDDDPRWCKPGTIVVTATNFCPPNIALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSVKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTAYNVAPVNWQFGQTFQGGQF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00237 287 PANTHER EXPANSIN-A15 41 287 IPR002963 GO:0009664
Spst8g00237 287 FunFam Expansin 195 287 - -
Spst8g00237 287 Pfam Lytic transglycolase 100 184 IPR009009 -
Spst8g00237 287 SUPERFAMILY Barwin-like endoglucanases 64 213 IPR036908 -
Spst8g00237 287 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 83 195 IPR007112 -
Spst8g00237 287 SUPERFAMILY PHL pollen allergen 192 284 IPR036749 -
Spst8g00237 287 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576
Spst8g00237 287 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Spst8g00237 287 PRINTS Expansin/Lol pI family signature 178 194 IPR007118 GO:0005576
Spst8g00237 287 PRINTS Expansin/Lol pI family signature 270 284 IPR007118 GO:0005576
Spst8g00237 287 PRINTS Expansin/Lol pI family signature 104 122 IPR007118 GO:0005576
Spst8g00237 287 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Spst8g00237 287 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 284 IPR007117 -
Spst8g00237 287 FunFam Expansin 53 191 - -
Spst8g00237 287 Pfam Expansin C-terminal domain 196 273 IPR007117 -
Spst8g00237 287 SMART dpbb_1 100 185 IPR007112 -
Spst8g00237 287 Gene3D - 195 287 IPR036749 -
Spst8g00237 287 CDD DPBB_EXPA_N 64 190 - -
Spst8g00237 287 PRINTS Expansin signature 270 286 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 95 109 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 194 206 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 170 183 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 153 170 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 122 133 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 134 144 IPR002963 GO:0009664
Spst8g00237 287 PRINTS Expansin signature 241 262 IPR002963 GO:0009664
Spst8g00237 287 Gene3D - 53 190 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00237 Spst-Chr8 2023452 2025909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00237 36 287 Expansin Gene Family AT2G40610 78.261 1.75e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00237 - - gmx:100816848 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00237 8 2023452 2025909 Spst8g00237 8 2023452 2025909 ECH
Spst8g00237 8 2023452 2025909 Spst7g00787 7 8211261 8212410 ECH
Spst6g00188 6 1951221 1953377 Spst8g00237 8 2023452 2025909 ECH
Spst6g00188 6 1951221 1953377 Spst8g00237 8 2023452 2025909 PCT