Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00236 ATGGCAGTCAATGCATATTCCAGTCTGCTACTTATTCTCATTTCTGTCTTTGCTGAAATGCACTTGCAGGGTGCCACTGCTGACGGTGGTTGGAAGGGTGGCCGCGCTACTTTCTACACTGGTTCTTCTAAGACCATGGGAGGTGCATGTGGTTACGGGGATGTGATCGGCGAAGGATATGGAAGTGACACTACGGCTCTAAGCACTGCTTTGTTCAACAATGGGTTGACTTGTGGGGCATGTTTTGCAATTAGGTGTGTTAATGACCCAAAATGGTGCAAGCCTGGCTCAGTTGTGGTTACTGCTACAAACTTGTGTCCTCCCAGCAACAATGGTGCTGGTTGGTGCAACCCTCCTCTACAACACTTCAATTTGGCAGAGTCAGCCTTCCTCAAAATTGCTCAATATCGTGCTGGAATTGTGCCTGTGCAATATACAAGAGTGCCCTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGCCATTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCCATGCAGTCTCCTTCAGAGGGGCCAGCGGTGGCTGGGAACCCATGTCAAGGAACTGGGGGCAAAATTGGCAGAGCAACGCCTACCTCAATGGACAAAGCCTCTCTTTTCAAGTCGCCGCCAGTGACGGTAGAATTGTGACATGCAACAACGTGGTACCAGCTAATTGGCAGTTTGGTCAGACCTTCCAAGGGGATTCACAGCACGCTCTCTTTTTCGTTTTAATTCCTTTCTCCTCTGCCCGGACTCCGATTCCGGGTCGGGTTGTGCCCGTGTTATCGACAGTGATGGGCGATCTTCATGCGAACGGCGCCGTTTTCGGGGAGGATCGCCCTTGCGGGTCCTCGCCGCCGTCTCCGCCGCTTCCGCTTTCGAATCCCGATCCGTCCTCCGTCCCGGCGGACGCTTGGGCGGCGGCCGAGCAAACAACTGGCGAGATTCTCCACAGCATACAGCCTACGCTTGCCGCCGACCGTAGGCGGAGGGAGGTCGTGGATTACGTACAGAGACTCATTCGTTACGGCGCCCGATGTGAGGTGATGTTGCTTGCTTTCTTCGATTTTCATCATTATTCAATTGTCGTCGTGGTCACCGACGATCGTTTTGGTTGCGTTGATGTTTGCTTTCTTTTTTCGTATTTAATTGAATTGAGTTTAAACGATCTTGGCGTGCTTGTTCGTGTCTAG 1224 0.5147 MAVNAYSSLLLILISVFAEMHLQGATADGGWKGGRATFYTGSSKTMGGACGYGDVIGEGYGSDTTALSTALFNNGLTCGACFAIRCVNDPKWCKPGSVVVTATNLCPPSNNGAGWCNPPLQHFNLAESAFLKIAQYRAGIVPVQYTRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDIHAVSFRGASGGWEPMSRNWGQNWQSNAYLNGQSLSFQVAASDGRIVTCNNVVPANWQFGQTFQGDSQHALFFVLIPFSSARTPIPGRVVPVLSTVMGDLHANGAVFGEDRPCGSSPPSPPLPLSNPDPSSVPADAWAAAEQTTGEILHSIQPTLAADRRRREVVDYVQRLIRYGARCEVMLLAFFDFHHYSIVVVVTDDRFGCVDVCFLFSYLIELSLNDLGVLVRV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00236 407 SUPERFAMILY Barwin-like endoglucanases 30 173 IPR036908 -
Spst8g00236 407 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Spst8g00236 407 Pfam Lytic transglycolase 64 145 IPR009009 -
Spst8g00236 407 Gene3D - 155 248 IPR036749 -
Spst8g00236 407 PANTHER EXPANSIN-A15 11 246 IPR002963 GO:0009664
Spst8g00236 407 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Spst8g00236 407 MobiDBLite consensus disorder prediction 287 312 - -
Spst8g00236 407 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Spst8g00236 407 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Spst8g00236 407 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Spst8g00236 407 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Spst8g00236 407 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Spst8g00236 407 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Spst8g00236 407 MobiDBLite consensus disorder prediction 293 307 - -
Spst8g00236 407 SMART dpbb_1 64 145 IPR007112 -
Spst8g00236 407 CDD DPBB_EXPA_N 30 150 - -
Spst8g00236 407 Gene3D - 16 150 IPR036908 -
Spst8g00236 407 FunFam Expansin 155 248 - -
Spst8g00236 407 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 155 IPR007112 -
Spst8g00236 407 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Spst8g00236 407 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00236 Spst-Chr8 2017220 2021515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00236 7 244 Expansin Gene Family AT2G40610 66.667 9.42e-119 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00236 - K20628 gmx:100816848 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00236 8 2017220 2021515 Spst8g00236 8 2017220 2021515 ECH