Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00223 ATGCAGTTTTGTGTTTTTCCCAAAGATAGATTAGATGAGATAACAAAGGTGAGAGCAGAGGCCGAAGCATCTTCTCAAATGGGAAAGAAGCATTTCTATGGTCCAACTCCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCCCCTTATTTTTCACCACATGAACCTCAAAAGTTTGCAGCCGTTCACAAAGTGTTTGGCGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAAGGTCAAAGGGCTGATGCAGCAAATAGCCTTGTTTATGAAGCTAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCAGCTTTGCAGCAACAAGTTCAATCTTTACAAGCAGAAATAAATGCAATAAGGGCAGAGATACTAAAATACAAGTATAGAGAAGCTGCAAGTCTCATTTCTTCCAATCATGCTGCTTTGGTTTCTTCAGCTGATGCATTATCAGCAGCAATTCCTGCACAATCACAGCCACAAGGTCTTTCTCAACCTCCTCCTCCATCGATACCATTGCCTTCTCCTCCAGCTAAACCATTATCTTCTCCTTCTATTATCCTTTCATCCTTGTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTCGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 735 0.4272 MQFCVFPKDRLDEITKVRAEAEASSQMGKKHFYGPTPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAEINAIRAEILKYKYREAASLISSNHAALVSSADALSAAIPAQSQPQGLSQPPPPSIPLPSPPAKPLSSPSIILSSLSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00223 244 MobiDBLite consensus disorder prediction 183 203 - -
Spst8g00223 244 Pfam Lateral organ boundaries (LOB) domain 46 142 IPR004883 -
Spst8g00223 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 189 - -
Spst8g00223 244 MobiDBLite consensus disorder prediction 177 244 - -
Spst8g00223 244 MobiDBLite consensus disorder prediction 204 244 - -
Spst8g00223 244 Coils Coil 125 152 - -
Spst8g00223 244 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00223 Spst-Chr8 1888909 1889736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00223 27 159 AS2 family AT2G30340 78.195 6.91e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst8g00223 LOB 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00223 - - gmx:100813489 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00223 8 1888909 1889736 Spst8g00223 8 1888909 1889736 ECH