Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00219 ATGGAGATATCTTTGTTGAAGGTTCTATCTGATGCGATATCTTCATTTTTTCAATTACCATTTTCTGAAAAAATGAAGTTAGAACCTGTATCAAAATATTACCAAAAGGCAGAGAAGATGCTTAAGCTGTTGAAGCCTATTATTGATACTACTGTTTTTTCAGATATAGCTTCTAATGAAGTGCTCAGTAAACTATTTGAGGAACTTGGTCTGGCAGTTGATGAGTTGACAGAGCTTATTCTGAACTGGCATCCGTTATCTAGCAAATTTTACTTTGTTAATCAAGTTGAGCCCTTGATATCAACAATTCAGGCTTTGGGTCCCAGCATTTTACAACAGCTGAAGGATTCATCACAATGTCTCCCTGATAATTTGGGAAATGACACATCATCAACCATTCGAAAAGCTTTCATGGAACAACTGGAAGGGGTAGGACCAAGTTGGGAGGTCCTGGAAAACATTGCTGAGAACATGGGTCTAAGGTCTAATCAAGAGGTTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGAAGGCTGAACAAATTGAACATACTGCAGAAGTTGAATATATTGATCAAATGATGTCAGTTGTAAATCGTATGCATGAGCATCTTGTTATTCTTAAGCAAGCTCATAGCTCTATCCCAGTGTCGGTACCTACTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTAATTGTGGCATCAGGACAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACCTAGGTCTTACCGTTTGTCCAAAGACACGTCAGACGCTGGTTCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGTGAAACACATGATGTGAAGCTTGTGGATCCCCTTAAGTCCAAAAGTTTAAATCAACCATCTTCCTTTCATGGTTCTATGGAGTCTGGTTTGACCAAGGATTCACCTGTTAATACTGGTCGGGAAACCCACCTAGAACGAACATCAACATTGCACCCCTCTTCTACTACAGGTGGTTCCTTAAACGGCACAGTTCATGAGCCATATGTGGATCATGAAAGAATCTCACACACAGGTTCAGATGATGGATCTGCCAGCTCAGATGAAGAAAGTGTGGATTCAGTTGGTGAATCATTAACATCACCATCTAGAAATGTCATGAGCTCAGAACAATCTCAAACTGATGTTAGGACTACTTCTGATAACAACAATACACCTCTGCTTTCAACCAGTTCGGTCCACAGTCGTGAAGCTTCTGGGGAATCAAATTCGGGGCCAGATGCTGTCGCCTTGCCAAATTGGCAAAGAGAATCTGAGTTTTCACCCCAATCAGCGGTGCCAAGGTCACGCCAAACTATATGGCAACGGTCATCCGAGTGGCTTGTTCCTAGGGTAGTGTCTACTCCTGTTGATACTAGAGCTGATCTGTCCGCTGCTGAAACTCAGGTTCGGACATTAGTGGAGCAGTTAAAGAGTGATTCTCTTGATGCTAAGAGGGAGGCAACATCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTGCAATCAATTGATACTAGGATCCAGGAAAATTCTGTTACAGCTCTCCTAAACTTATCAATCAATGATAACAACAAAGCTGCCATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTTAAGACAGGGAGTTCAGAAGCCAAGGAAAATTCAGCTGCCACGCTTTTCAGCCTCTCAGTTACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCAATTAGACCACTGGTTGATTTGTTGGGGAATGGAACACCTAGGGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCATTATTTCATGAAAACAAGGATCGGATTGTGCAAGCTGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCTGCAGCTGGAATGGTCGATAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAACAGCAATTGGTGGTGATCAAGGTATTCCTGTTTTGGTTGAGGTTATTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCCGCAGCGGCTCTTCTACATCTATGCTCAGACAACCACAGATATTTAAACAGGGTGCTCCAAGAAGGAGCCGTGCCACCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTTGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGCTGGAAGAACTTGA 2319 0.4239 MEISLLKVLSDAISSFFQLPFSEKMKLEPVSKYYQKAEKMLKLLKPIIDTTVFSDIASNEVLSKLFEELGLAVDELTELILNWHPLSSKFYFVNQVEPLISTIQALGPSILQQLKDSSQCLPDNLGNDTSSTIRKAFMEQLEGVGPSWEVLENIAENMGLRSNQEVLIEAVALEKLKEKAEQIEHTAEVEYIDQMMSVVNRMHEHLVILKQAHSSIPVSVPTDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLVDPLKSKSLNQPSSFHGSMESGLTKDSPVNTGRETHLERTSTLHPSSTTGGSLNGTVHEPYVDHERISHTGSDDGSASSDEESVDSVGESLTSPSRNVMSSEQSQTDVRTTSDNNNTPLLSTSSVHSREASGESNSGPDAVALPNWQRESEFSPQSAVPRSRQTIWQRSSEWLVPRVVSTPVDTRADLSAAETQVRTLVEQLKSDSLDAKREATSELRLLAKHNMDNRIVISNCGAISLLVDLLQSIDTRIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSSEAKENSAATLFSLSVTEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSLFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKTAIGGDQGIPVLVEVIELGSARGKENAAAALLHLCSDNHRYLNRVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGGAGRT 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00219 772 MobiDBLite consensus disorder prediction 335 349 - -
Spst8g00219 772 SUPERFAMILY ARM repeat 489 761 IPR016024 -
Spst8g00219 772 MobiDBLite consensus disorder prediction 375 435 - -
Spst8g00219 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 529 571 IPR000225 GO:0005515
Spst8g00219 772 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Spst8g00219 772 MobiDBLite consensus disorder prediction 304 436 - -
Spst8g00219 772 Coils Coil 163 183 - -
Spst8g00219 772 FunFam RING-type E3 ubiquitin transferase 219 294 - -
Spst8g00219 772 Gene3D - 470 767 IPR011989 -
Spst8g00219 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 297 IPR013083 -
Spst8g00219 772 CDD RING-Ubox_PUB 221 273 IPR045210 -
Spst8g00219 772 PANTHER U BOX DOMAIN-CONTAINING 29 760 - -
Spst8g00219 772 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Spst8g00219 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 611 653 IPR000225 GO:0005515
Spst8g00219 772 FunFam RING-type E3 ubiquitin transferase 473 767 - -
Spst8g00219 772 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Spst8g00219 772 SMART arm_5 600 640 IPR000225 GO:0005515
Spst8g00219 772 SMART arm_5 722 763 IPR000225 GO:0005515
Spst8g00219 772 SMART arm_5 518 558 IPR000225 GO:0005515
Spst8g00219 772 SMART arm_5 559 599 IPR000225 GO:0005515
Spst8g00219 772 SMART arm_5 681 721 IPR000225 GO:0005515
Spst8g00219 772 SMART arm_5 641 680 IPR000225 GO:0005515
Spst8g00219 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 652 693 IPR000225 GO:0005515
Spst8g00219 772 MobiDBLite consensus disorder prediction 304 324 - -
Spst8g00219 772 Pfam Armadillo/beta-catenin-like repeat 559 598 IPR000225 GO:0005515
Spst8g00219 772 Pfam Armadillo/beta-catenin-like repeat 601 639 IPR000225 GO:0005515
Spst8g00219 772 Pfam Armadillo/beta-catenin-like repeat 520 557 IPR000225 GO:0005515
Spst8g00219 772 Pfam Armadillo/beta-catenin-like repeat 643 679 IPR000225 GO:0005515
Spst8g00219 772 SUPERFAMILY RING/U-box 209 297 - -
Spst8g00219 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 570 612 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00219 Spst-Chr8 1861595 1864440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00219 180 771 U-box Gene Family AT2G23140 60.220 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00219 - - gmx:100777715 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00174 6 1851356 1857149 Spst8g00219 8 1861595 1864440 PCT