Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00198 ATGACCTGTCAGCAAGACACAATTTTATCGTTGTCCACAGGCCTCATCCTCAATAAAGATTTACATACTCTCAATATTCCGGAGCTGGCAAACTCGACTTCACAGAAAGCATGGCTACACGATCAAGAGGATCGCAACAAGAGAACCGTAACAGACTTGTACAAAGCCATAACCTCAGAGGACACCAACACAATGCACCGTCTTCTGGCACCAGACTTGGAGTGGTGGTTCCACGGCCCACCCTCCCACCGTCACCACCTCATTCCTCTCCTCACAGCCACTACCACCACCTCCTCCTCGAAGCCCGTGCTGGTTCCTGACCTTATCGTTGGGTTCGGATCAGTGACCATTGCTGAAGGGTTCGACGTGACCAACTTGGTGTGGTGGGTGCACGCGTGGACCATCACCGCCGACGGCGTCATCACGGAGGTTAGGGAGTACGTCAACACCTCCGTCACCGTCACCAGGCTCGGCTTCCATGACTCCGACGATGTTGTTGCTTCTGCGACGTGTCAAAGCGTGTGGCAGAGCAAGCTGTGCGATGAGTCTGTGATTAAAAAAAATAAAAAATATATGGCTGTGGTATTTAATGTGACACCTGAAAAAGAAATCAACAAAATCCCCAAAATCGATACAACGTTTGTTTCCAGCGTTCATCTCAGCTTGGCTAGGGCACCACAGCTACCCTCTGTTCATACTTCTCCATCAGAAGCAGAGAGAGTTTGGGAGAGAATGTTATCAGGGGACATACCTCCAAACCAGACCATTTACATCAAGAATCTCAATGAGAAGGTCAAGAAAGATGAGTTGAAGAGATCACTGTATTGCTTGTTCTCTCAATATGGAAGAATTTTGGATGTTGTTGCTCTAAAGACACCCAAGCTTCGAGGACAGGCGTGGGTTTGTTTCAGTGAAGTCACTGCAGCCAGTAATGCAGTGAGACAAATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATACGCAAAAACAAAGTCAGATTGTGTTGCGAAAGAAGAGGGTAGTTATGTTCCACGAGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAAAAAGCGGCGTGCTGAGGAAGCACAGCACTCTGCTGCGGCTAATGGAACACATAGTGCAAGTAATGGTGGTCCAACTGCATCATTCCGTCAAGGACCCAGTGCCCAAGAAGCAGCTGCTCCTAACAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCCTGATTGAAGCCAAGCCGGGAATTGCATTTGTTGATTTTGAAGATGATGTGCAATCATCCATGGCCATGCAGGCCCTTCATGGCTTCAAAATCACTCCACAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG 1431 0.4661 MTCQQDTILSLSTGLILNKDLHTLNIPELANSTSQKAWLHDQEDRNKRTVTDLYKAITSEDTNTMHRLLAPDLEWWFHGPPSHRHHLIPLLTATTTTSSSKPVLVPDLIVGFGSVTIAEGFDVTNLVWWVHAWTITADGVITEVREYVNTSVTVTRLGFHDSDDVVASATCQSVWQSKLCDESVIKKNKKYMAVVFNVTPEKEINKIPKIDTTFVSSVHLSLARAPQLPSVHTSPSEAERVWERMLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKEEGSYVPREKKKKQEEKAEKKRRAEEAQHSAAANGTHSASNGGPTASFRQGPSAQEAAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDVQSSMAMQALHGFKITPQNPMIITFAKK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00198 476 CDD RRM2_U1A_like 400 472 - -
Spst8g00198 476 SUPERFAMILY RNA-binding domain, RBD 252 465 IPR035979 GO:0003676
Spst8g00198 476 Gene3D - 248 354 IPR012677 -
Spst8g00198 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 325 IPR000504 GO:0003723
Spst8g00198 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 404 463 IPR000504 GO:0003723
Spst8g00198 476 MobiDBLite consensus disorder prediction 341 368 - -
Spst8g00198 476 Gene3D - 392 476 IPR012677 -
Spst8g00198 476 SUPERFAMILY NTF2-like 44 155 IPR032710 -
Spst8g00198 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 333 IPR000504 GO:0003723
Spst8g00198 476 MobiDBLite consensus disorder prediction 371 394 - -
Spst8g00198 476 CDD RRM1_U1A_like 255 332 - -
Spst8g00198 476 Coils Coil 348 370 - -
Spst8g00198 476 PANTHER OS07G0691300 PROTEIN 33 182 IPR009798 -
Spst8g00198 476 MobiDBLite consensus disorder prediction 341 394 - -
Spst8g00198 476 FunFam U2 small nuclear ribonucleoprotein B'' 393 476 - -
Spst8g00198 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 402 476 IPR000504 GO:0003723
Spst8g00198 476 Pfam Wound-induced protein WI12 90 182 IPR009798 -
Spst8g00198 476 Gene3D - 19 160 - -
Spst8g00198 476 FunFam U1 small nuclear ribonucleoprotein A 248 353 - -
Spst8g00198 476 SMART rrm1_1 403 472 IPR000504 GO:0003723
Spst8g00198 476 SMART rrm1_1 255 329 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00198 Spst-Chr8 1674088 1684277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00198 244 476 Eukaryotic Initiation Factors Gene Family AT1G71770 22.176 1.45e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00198 K11094 - gmx:100805822 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00198 8 1674088 1684277 Spst8g00198 8 1674088 1684277 ECH