Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00196 ATGGCTTCTTCTGCTGGTAGTTTAGACACCTCTGCAACTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCCTTCATGACCACTTCCTTCTCTGACCTCCTTGCTTCTCCCACAGACAACGACAAGCCTCAGGGTGGTTTGTCTGACAGAAATGTCTCTGGTGTCCCCAAATTCAAGTCCACTCCACCTCCTTCTCTGCCTCTCTCCCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGCTTGAGTCCTGCTGATCTTCTTGACTCTCCGGTTCTCCTTAACTCTTCTAACATACTGCCATCTCCAACAACTGGAGCATTTGTTGCTCAGAGCTTCAACTGGAAGAGCAGTTCAGGGGGAAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAGACCCAACCAAAGCCTCCTGTTTCATCCACAGTAACATATCAATCTTCAAATGCTACAGTTCAAACGCAACAGCCATGGAGTTTTCAGGAGACCACAAAACAAGATAGTTTTTCTTCAGGGAAGAATATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAAATTGCTAGTGTCCAAACCAACCACAGCAATGGGTTTCAATCGAATTATAGTAATTATCCCCCACAATCTCAGACCTTAAGCAGGAGGTCAGATGATGGATACAATTGGAGGAAATATGGCCAAAAACAAGTGAAAGGGAGTGAAAATCCAAGAAGTTATTACAAGTGCACATACCCCAATTGTCCTACTAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCTACTAGGAGAAACTCATCATCTTCCTCTTCTCTTGCAATCCCTCCTTCAAATCCCGTCAGCACTGAAATTCAAGATCAATCATTTCATGGTAGTGGACAAATGGATTCCGCTGCCACCCCAGAGAACTCATCAATATCAATAGGAGATGACGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCGGGGGGAGATGAGTATGATGACGATGAACCTGATGCAAAAAGATGGAAAGTTGAAGGAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTGAGAGAGCCTAGAGTTGTAGTTCAGACAACCAGTGACATCGATATCCTAGATGATGGGTACAGATGGAGAAAATATGGGCAGAAAGTAGTGAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGTACACACCCAGGATGTCCAGTGAGGAAGCATGTGGAAAGAGCCTCACATGATCTAAGGGCTGTGATCACAACCTACGAGGGAAAGCACAACCATGATGTCCCTGCAGCCCGTGGCAGTGGTAGCCATTCTGTTAACAGACCCCTGCCAAACAATGCTTCAAACAACACCTCTGCAGCCACTGCTATAAGGCCATTGTCAGCGATCTATCAAACTGACAATTCCCTTCAAAGCCAAAGGCCACAAGCACCACCAGAAGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTCCAGGAAGTTTTGGATTCTCAGGTTTTGCGAATCCAATGGGGTCTTACATGAATCAGCAGCAACTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACATGTTCCTTGAGTCTCTTCTATGCTGA 1716 0.4487 MASSAGSLDTSATANSFTNFTFSTHPFMTTSFSDLLASPTDNDKPQGGLSDRNVSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPADLLDSPVLLNSSNILPSPTTGAFVAQSFNWKSSSGGNQQIVKEEDKSFSNFSFQTQPKPPVSSTVTYQSSNATVQTQQPWSFQETTKQDSFSSGKNMMKTENSSSMQSFSPEIASVQTNHSNGFQSNYSNYPPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLAIPPSNPVSTEIQDQSFHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGGDEYDDDEPDAKRWKVEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPNNASNNTSAATAIRPLSAIYQTDNSLQSQRPQAPPEGQSPFTLEMLQSPGSFGFSGFANPMGSYMNQQQLSDNVFSSRTKEEPRDDMFLESLLC 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00196 571 MobiDBLite consensus disorder prediction 346 374 - -
Spst8g00196 571 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 SMART WRKY_cls 402 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 MobiDBLite consensus disorder prediction 33 49 - -
Spst8g00196 571 MobiDBLite consensus disorder prediction 282 387 - -
Spst8g00196 571 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 MobiDBLite consensus disorder prediction 33 73 - -
Spst8g00196 571 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 MobiDBLite consensus disorder prediction 166 232 - -
Spst8g00196 571 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 Pfam WRKY DNA -binding domain 403 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 ProSiteProfiles WRKY domain profile. 397 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 MobiDBLite consensus disorder prediction 456 484 - -
Spst8g00196 571 FunFam WRKY transcription factor 223 292 - -
Spst8g00196 571 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 FunFam WRKY transcription factor 33 389 455 - -
Spst8g00196 571 Gene3D WRKY domain 389 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 MobiDBLite consensus disorder prediction 287 345 - -
Spst8g00196 571 Gene3D WRKY domain 219 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00196 571 MobiDBLite consensus disorder prediction 166 236 - -
Spst8g00196 571 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 94 486 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00196 Spst-Chr8 1654041 1656897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00196 230 570 WRKY Transcription Factor Family AT2G38470 57.584 3.43e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst8g00196 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00196 K13424 - gmx:100127393 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00155 6 1710921 1713796 Spst8g00196 8 1654041 1656897 PCT