Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00178 ATGTATATTGCTAGATCTGTCACATTACCGTTTCCCAACTCTTCATCCATTTCATTCAAATTACCCTTCCTCCTCCAATCCTGTGCCCTAATCTATTCTCCCAACGCCCCTCCCTCACATTCTCTTCTCATTGTCAACACTCTTTTCAGTGTAACGGAAATGGAGAAGTATGAGAAACTGGAGAAGGTGGGAGAAGGAACCTACGGGAAAGTGTACAAGGCACGTGAGAAAGCTAGCGGCAACGTGGTGGCGCTGAAGAAGACGCGGCTGGAGATGGACGAGGAGGGTGTACCTCCGACGGCCCTACGAGAGGTCTCGCTCCTGCAACTCCTCTCCCAATCCATCTACATCGTGCGTCTCCTTGCCGTCGAACATGTCGACAAGGTTCCCAAGGCTCACAAGGCCTCCTCCAACCCCCTCACCAAACCCATCCTCTACCTTGTCTTCGAGTACCTTGACACCGACCTCAAGAAGTTTATCGATTCCCATCGCAAGGGCCCTAACCCTAGGCCCCTCCCTCCTCAACGTATTCAGAGTTTTCTGTTCCAGCTCTGCAAGGGCGTGGCGCACTGCCATAGCCATGGTGTCCTCCACCGCGATCTCAAGCCCCAGAACCTTCTCCTCGACCAGCAGAAGGGGATTCTCAAGATCGCTGATCTGGGCCTCGGCCGCGCCTTCACCGTTCCTCTCAAGAGCTACACGCATGAGATTGTTACTCTTTGGTACAGAGCGCCTGAGGTTCTCCTTGGCTCCACGCATTACTCCACCGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGCTGAAATGGTGAGAAGGCAAGCGCTTTTTCCTGGGGATTCTGAGTTCCAGCAGCTAATGCACATATTCAAGATGTTGGGGACTCCAACGGAGGAGCAATGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTGTACCCGCGGTGGGAACCTCAGAATTTGTCAAGGAATGTACCTACCTTAGGACCTGATGGAGTGGACCTTCTCTCGAAAATGCTCAAGTATAACCCTTCTGAGAGAATATCTGCAAAGGCAGCACTGGATCATCCCTACTTTGATAGTCTGGACAAATCTCAATTTTAG 1104 0.5172 MYIARSVTLPFPNSSSISFKLPFLLQSCALIYSPNAPPSHSLLIVNTLFSVTEMEKYEKLEKVGEGTYGKVYKAREKASGNVVALKKTRLEMDEEGVPPTALREVSLLQLLSQSIYIVRLLAVEHVDKVPKAHKASSNPLTKPILYLVFEYLDTDLKKFIDSHRKGPNPRPLPPQRIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSEFQQLMHIFKMLGTPTEEQWPGVTSLRDWHVYPRWEPQNLSRNVPTLGPDGVDLLSKMLKYNPSERISAKAALDHPYFDSLDKSQF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00178 367 FunFam Cyclin-dependent kinase B2,2 53 153 - -
Spst8g00178 367 SMART serkin_6 57 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00178 367 Gene3D Transferase(Phosphotransferase) domain 1 155 366 - -
Spst8g00178 367 FunFam Cyclin-dependent kinase 2 155 366 - -
Spst8g00178 367 PANTHER CELL DIVISION PROTEIN KINASE 54 359 - -
Spst8g00178 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Spst8g00178 367 Gene3D Phosphorylase Kinase; domain 1 44 153 - -
Spst8g00178 367 ProSiteProfiles Protein kinase domain profile. 57 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00178 367 Pfam Protein kinase domain 57 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00178 367 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Spst8g00178 367 SUPERFAMILY Protein kinase-like (PK-like) 51 362 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00178 Spst-Chr8 1476702 1479989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00178 54 367 Core Cell Cycle Gene Families AT3G54180 82.166 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Spst8g00178 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00178 K07760 - gmx:100805119 604.749