Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00168 ATGACGAAGGGCAAGGCTTGCGAGCTTTGTAATCAGCAAGCGTCTCTCTATTGTCCCTCGGATTCCGCATTTCTCTGTTCCGATTGTGACGCCGACGTGCACTCCGCCAACTTCCTCGTCGCTCGCCACTTCCGCCGACGCCTCTGCTCCAAATGCAACCGTTTTACCGGAATCTACATCTCCGGCGCCACCACGCTCCCATCCACATGCGCCTCTTGCTCGCCGGAAAATCCTCCTTCCGATGACGGCGATTCTCTCCCTTCCTCTTCCACCTGCGTCTCAAGTTCGGAGTCCTGTGCCACTAAGAAGATTGAGGCGACACGCACGGCGGCAGGGAAGAAGAGGAGGAGTTTTTTTAGTTCTGTCACCGACGATGCGTCTCAGGAAGCGAAGAGACGACGGATGAATGTCGGATCGGTGGAAGATGAGGAGGTATTTGAAAAGTGGAGCAGAGAGATAGGGTTAGGGTTAGGTGAGAACGGTAACCGCGTGGCGTCGCACGCTCTGAGAGTATGCCTGGGAAAGTGGAATTCCCTTCCGTTCAAGGTGGCTGCGGCGACGTCGTTTTGGCTGGGCCTGAGATTTTGTGGGGACAGAAGTCTCGCCAGGTGGCAGAATCTGGCGAGGTTGGAGACCGTCTCCGGAGTGCCAGCTAAGCTGATTCTGGCCGCACATGCGAACCTCGCACGCGCCTTCTCGCAGCGCCGCGAATTGCACGAGGGATGGGGCGAGTCCTAG 738 0.5732 MTKGKACELCNQQASLYCPSDSAFLCSDCDADVHSANFLVARHFRRRLCSKCNRFTGIYISGATTLPSTCASCSPENPPSDDGDSLPSSSTCVSSSESCATKKIEATRTAAGKKRRSFFSSVTDDASQEAKRRRMNVGSVEDEEVFEKWSREIGLGLGENGNRVASHALRVCLGKWNSLPFKVAAATSFWLGLRFCGDRSLARWQNLARLETVSGVPAKLILAAHANLARAFSQRRELHEGWGES 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00168 245 CDD Bbox1_BBX-like 6 48 - -
Spst8g00168 245 ProSiteProfiles Zinc finger B-box type profile. 2 48 IPR000315 GO:0008270
Spst8g00168 245 SMART bboxneu5 2 48 IPR000315 GO:0008270
Spst8g00168 245 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 6 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00168 Spst-Chr8 1404477 1405214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00168 7 245 C2C2-CO-like Transcription Factor Family AT3G21150 31.967 3.42e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst8g00168 zf-B_box 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00168 - - pvu:PHAVU_008G254400g 379.793