Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00166 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATATGCAAGAACATGAGCATCACGGGCTGCACCATATGAGCAATGGGAATGGGATTGACGAGGATCAGAATGATGGTGGTGATACTAACTGTGGTGGAAGTGAAAGCGTGGAAGGTGATGTCCCCTCCAGCCATGGAAATCTCACTGACAATCACGCTGTAATAATGGATCAAGGGGGTGATGCTGGGGATCAGCTTACGTTATCTTTTCAGGGCCAAGTTTATGTCTTTGACTGCGTGTCACCAGAAAAGGTTCAAGCTGTACTGCTGTTACTGGGAGGCCGTGAAATACCTCCAACTATGCCTACCATGCCAGTATCTCCTCACCATAATAACCGGGGGTTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAAGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCATGAGGAATCTGCATCAACTGCAACAAATTGGGGGACAAATGAAAACTGGTCGACTGAGAATAACGGATCCCAGCAGCTAGATATTGTTTGTAGGCACTGTGGCATCAGTGAGAAGTCCACACCGATGATGCGACGTGGGCCTGAAGGGCCAAGAACACTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACACTGAGGGACCTATCAAGGGCGGCACCCACGTCTGGACCAATCAAGAATGAGAATAAAAGTTTAGAGACCAACCAGATAGTCCATAGAGTTGCAGGAGAAGCTGATGATTCGTCGTGA 903 0.4585 MDGIHGGDSRIHISDGQHPIHVPYMQEHEHHGLHHMSNGNGIDEDQNDGGDTNCGGSESVEGDVPSSHGNLTDNHAVIMDQGGDAGDQLTLSFQGQVYVFDCVSPEKVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHEESASTATNWGTNENWSTENNGSQQLDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPTSGPIKNENKSLETNQIVHRVAGEADDSS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00166 300 CDD ZnF_GATA 225 281 IPR000679 GO:0006355|GO:0043565
Spst8g00166 300 Pfam tify domain 87 116 IPR010399 -
Spst8g00166 300 MobiDBLite consensus disorder prediction 32 75 - -
Spst8g00166 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 272 - -
Spst8g00166 300 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Spst8g00166 300 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Spst8g00166 300 PANTHER GATA TRANSCRIPTION FACTOR 28 28 287 IPR045280 GO:0006355
Spst8g00166 300 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Spst8g00166 300 Gene3D - 216 283 IPR013088 GO:0006355|GO:0008270
Spst8g00166 300 ProSiteProfiles GATA-type zinc finger domain profile. 220 279 IPR000679 GO:0006355|GO:0043565
Spst8g00166 300 MobiDBLite consensus disorder prediction 40 74 - -
Spst8g00166 300 MobiDBLite consensus disorder prediction 186 216 - -
Spst8g00166 300 SMART tify_2 82 117 IPR010399 -
Spst8g00166 300 Pfam CCT motif 150 192 IPR010402 GO:0005515
Spst8g00166 300 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Spst8g00166 300 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00166 Spst-Chr8 1378061 1383008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00166 1 299 Tify Gene Family AT1G51600 63.192 1.68e-136 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst8g00166 CCT 8.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00166 - - pvu:PHAVU_008G254600g 588.956