Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00163 ATGAAAAAGGAAGGGACAAGAAACATTGACTTGGGAGTGATGAAGACTGAGGAGCTTTGGAAAGAAGGCACGAAATTTCGCGGAAACTTCCTACATGTGGTGCGGCCACAGCGCCAAACAGAGATGGGTGAGGAAGTGAAGGCAATTGTTCCAGAGTCCGTTCTGAAGAAGCGAAAGAGGGAAGAGGAATGGGCTTTGGCGAAGAAGCAGGAGCTAGAAGCTGCGAAGAAGAAGAGAGCTGAGAGCCGCAAACTCATCTACAACAGAGCCAAGCAGTACGCTAGGGAGTACGATCAACAGGAGAAGGAATTGATTCGGTTGAAACGTGAGGCTAAACTGAAAGGTGGATTTTATGTGGATCCAGAGGCTAAGCTCTTGTTTATTATCCGCATTCGTGGTATCAATGCGATGGACCCCAAATCAAGGAAGATCCTGCAGCTCTTGCGATTGAGACAGATCTTCAATGGTGTATTTCTCAAGGTCAACAAAGCCACAGTGAACATGCTGCACAGAGTAGAACCATATGTGACTTATGGATACCCAAATCTGAAGAGTGTGAGAGAACTTATTTACAAAAGAGGGTATGGAAAGCTCAACAAGCAGAGGACTGCTCTAACAGACAACTCTATCATTGAGCAGGCACTGGGCAAATATGGAATCATTTCAGCTGAAGATCTTATCCACGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCCTTGGGTGGCTTAAAGAAGAAGAGAAACCACTACGTTGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGGATGAATTGA 855 0.4573 MKKEGTRNIDLGVMKTEELWKEGTKFRGNFLHVVRPQRQTEMGEEVKAIVPESVLKKRKREEEWALAKKQELEAAKKKRAESRKLIYNRAKQYAREYDQQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISAEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00163 284 PANTHER 60S RIBOSOMAL PROTEIN L7 48 284 IPR039699 -
Spst8g00163 284 ProSitePatterns Ribosomal protein L30 signature. 144 176 IPR018038 -
Spst8g00163 284 Gene3D - 125 227 IPR036919 -
Spst8g00163 284 Gene3D - 228 284 IPR036919 -
Spst8g00163 284 Pfam Ribosomal protein L30p/L7e 126 176 IPR016082 -
Spst8g00163 284 SUPERFAMILY Ribosomal protein L30p/L7e 125 284 IPR036919 -
Spst8g00163 284 CDD Ribosomal_L7_archeal_euk 125 284 IPR035808 -
Spst8g00163 284 NCBIfam 60S ribosomal protein uL30 51 284 IPR005998 GO:0000463|GO:0003735|GO:0022625
Spst8g00163 284 FunFam 60S ribosomal protein L7 125 229 - -
Spst8g00163 284 Coils Coil 83 110 - -
Spst8g00163 284 FunFam 60S ribosomal protein L7 230 284 - -
Spst8g00163 284 Pfam Ribosomal L30 N-terminal domain 50 121 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00163 Spst-Chr8 1352319 1355377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00163 45 284 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 86.250 1.80e-156 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00163 K02937 - gmx:100813342 425.246