Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00150 ATGGCGACAGACGCTAGGGCGAAGTTTCAGAACCCGGATTTTCGCCCCGATTTTCACGCGGACTTAACGGTATCAACTCACGACGGACTCCACTTTTGGCAGTTCATGATCGCCGGATCCATCGCGGGCTGTGTCGAACACATGGCCATGTTTCCCGTTGACACCGTTAAGACCCGTATGCAGGCCTTGGGCTCCTGCCCCGTCAAAACCGGTACGGTCCGTCAGGCCCTAAAGTCCATTCTTCAATCGGAGGGGCCGTCGGCCCTTTACCGTGGCATTGGCGCGATGGGCCTCGGCGCCGGCCCGGCCCACGCTGTCTATTTCTCCGTATACGAGACCTGCAAGAAGCGTTTCTCTGTTGGGAAGCCTAACAACGCCGCCGCGCACGCCGCCTCCGGCGTCTGCGCCACCGTGGCCAGCGACGCCGTGTTCACACCGATGGACATGGTGAAGCAGCGGCTGCAGCTGGGGAACAGCGGTTACAAAGGGGTTTGGGACTGCGTGAGGAGGGTCATGAGCGAGGAAGGGTTTGGGGCCTTCTATGCCTCTTATAGGACCACCGTGTTGATGAATGCGCCGTTCACCGCCGTGCATTTCACGACCTATGAGGCCGCGAAACGTGGTCTAATGGAGGTCTCTCCGGATAGTGTTGACGATGAACGGTTGGTTGTGCATGCCACCGCCGGTGCTGCTGCCGGAGCCTTGGCTGCCGCGGTTACGACGCCTTTTGATGTTGTCAAGACTCAGTTGCAGTGTCAGGGTGTCTGTGGTTGTGATAGGTTCAAAAGTGGATCAATTGGGGATGTTGTTAGAACAATATTGAACAAAGATGGATATAGAGGGCTCATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAAAGACACTGGAACTGTTACCTAA 975 0.5569 MATDARAKFQNPDFRPDFHADLTVSTHDGLHFWQFMIAGSIAGCVEHMAMFPVDTVKTRMQALGSCPVKTGTVRQALKSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKRFSVGKPNNAAAHAASGVCATVASDAVFTPMDMVKQRLQLGNSGYKGVWDCVRRVMSEEGFGAFYASYRTTVLMNAPFTAVHFTTYEAAKRGLMEVSPDSVDDERLVVHATAGAAAGALAAAVTTPFDVVKTQLQCQGVCGCDRFKSGSIGDVVRTILNKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDTGTVT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00150 324 FunFam Mitochondrial RNA-splicing protein MRS3 159 322 - -
Spst8g00150 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Spst8g00150 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
Spst8g00150 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Spst8g00150 324 SUPERFAMILY Mitochondrial carrier 28 305 IPR023395 -
Spst8g00150 324 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Spst8g00150 324 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Spst8g00150 324 Pfam Mitochondrial carrier protein 30 118 IPR018108 -
Spst8g00150 324 Gene3D Mitochondrial carrier domain 13 159 IPR023395 -
Spst8g00150 324 Gene3D Mitochondrial carrier domain 160 324 IPR023395 -
Spst8g00150 324 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Spst8g00150 324 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Spst8g00150 324 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Spst8g00150 324 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Spst8g00150 324 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Spst8g00150 324 PANTHER MITOFERRIN-1-RELATED 26 314 - -
Spst8g00150 324 FunFam Mitochondrial RNA-splicing protein MRS3 11 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00150 Spst-Chr8 1232753 1235165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00150 1 320 Chloroplast and Mitochondria Gene Families AT1G07030 73.780 3.40e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00150 K15113 - gmx:100802640 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00150 8 1232753 1235165 Spst8g00150 8 1232753 1235165 ECH