Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00125 ATGCCGACTCAATTCGAGTCACCCAGTAACTCACTGAGTCAACTCGCTCAGAACGTGTTCTCCGACAACAACAGCAACATCATGCTCGCAGCCATTCTATCCTTGCTCTTAGTCATCCTCTTCGTCCTCCTACTCCACGTGTATGCCAAGTGGTTCTTATCGCAGTCGCAATTACGTTCTCACACTCGTCGGTGGCGAACTCCGGTGACCATCTCCGGCGTTTTGGAACCTTCCCATTTCCGCAGCATCAACATAGAAGCGCCACCCTCGTGTACCAAAGGCCTAGATTCAGCGACAGTTTCAGCAATTCCGATGTTTGTGCAGAAAACAGAGGAAACAGAGGAATTGGAATGTGTGATTTGTTTGAGCGTTATTGAGGAGGGTGAGATTGGAAGGAGGTTGCCAATGTGTGGCCACGCTTTTCACGTGGAGTGCATTGACATGTGGTTTACTTCACATTGCAATTGTCCCATTTGTAGAGCTCCTGTTGTGTTGAGCGATGATTCTCAATTGGGTTCTGATGATGGTGACGGTGTGTTTGAGATTATGGTTGTTACACCTGGTTATGAGATTAGTGAGAGTGAAATTGATGCCATGAGTGGTTCTGATCCAGAAACTTCTTCATCTTTGTTGGGTTTCTCTTTGAAGAGATTGCTGAGCAAGGTTTTTCCGTCACCTGATCATGTAACCGAACTGGATGCTTCACAATGA 711 0.4669 MPTQFESPSNSLSQLAQNVFSDNNSNIMLAAILSLLLVILFVLLLHVYAKWFLSQSQLRSHTRRWRTPVTISGVLEPSHFRSINIEAPPSCTKGLDSATVSAIPMFVQKTEETEELECVICLSVIEEGEIGRRLPMCGHAFHVECIDMWFTSHCNCPICRAPVVLSDDSQLGSDDGDGVFEIMVVTPGYEISESEIDAMSGSDPETSSSLLGFSLKRLLSKVFPSPDHVTELDASQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00125 236 FunFam RING-H2 finger protein ATL1 82 165 - -
Spst8g00125 236 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Spst8g00125 236 CDD RING-H2_EL5-like 117 160 - -
Spst8g00125 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 170 - -
Spst8g00125 236 SMART ring_2 118 159 IPR001841 -
Spst8g00125 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 168 IPR013083 -
Spst8g00125 236 Pfam Ring finger domain 117 160 IPR001841 -
Spst8g00125 236 SUPERFAMILY RING/U-box 104 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00125 Spst-Chr8 1037202 1037912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00125 2 161 Rapid Response to Elicitors AT3G16720 36.196 6.76e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00125 - - vra:106764505 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00125 8 1037202 1037912 Spst8g00125 8 1037202 1037912 ECH
Spst6g00112 6 1283202 1283987 Spst8g00125 8 1037202 1037912 PCT