Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00118 ATGGATGGTGAGAAGCGTTATGAGAGCACCAAACGTAAACGAGGGTCGAGGAAAAAAAAGCTTTTCGTCAATGAGAAAGTCGAGGTAAAAAGTATGGAGGAGGGTTTTCTGGGTTCATGGCACCCGGGGACGGTGGTCCGTTGCGAGAAGCAGAAGCGTTATGTAAAATATGACAACATTCTAGATGATGATGGATCAAAATACCTTGTTGATGTGGTGTATGTTTCAGCTGTTTTGGATGGTTATAGTTCTTCTTCAGATTATAGCAATGAACATGGATTCATCAGACCACTGCCTCCTCCGCTTGAGTTTGGGGAGAAGGACCTTCCATTTGGTCTCTGTGTCGATGTAAATTATCAAGAAGGCTGGTGGGAAGGCGTTATATTTGATCACTGCAACGGAATGGAGGAGAGGAGCGTGTTCTTCCCGGATTTGGGTGATGAAATGAAGGTTGAAACTCATCAATTACGGATAACACAGGATTGGGATGAAGCTACTGAGAATTGGAAGGTACGGGGGAAGTGGGTGTTCCTTGAAGTAGTTCAGGAGTGTGAAAAGGAATCCTTTGTTGCAGTTTCAGTGAAGCAAATTTGGTATGATATAAGGGTCAGAAATGATTTTGACAATATAAAACATTGGACTTGTAATGAGAAGGACTTGTGGAGAGCCCTTGTAGTGGAGGTGGTTGGTGACTACTATGTTCTCACACTAGAAGAAATTTTCCCAGCTTTAAACCTTCCAGAGGATTTCTTGAAAGAAACACCAGAGCCGAACTCAGTGGAACATACTGACAACATTCATTGTCATGCTGGACACTCTAATGTATTTGGTTCTGACATTGGAGTTTCTGATAGCCTTATGGAAAATGGTGGCGAATCAAACTTGTTGGATTCCAATAAAAAGGGTTGTAACATCATTTGCTTTCAAGAGGAATATGATAAAGATCCCTTGACGGACGGGGGATATGAGAAGAAAATTATTTTGCAGGAGGAACCTGTATCTCCTGTTCAAGAGATCATGCCTGATGCTAGTGAAGTAAAGTCAGGTGCTAGCTCTTGTTCAAAGAAGAGAAAACGTAGACGCTCAGTGTCCACTCGTTGGAAACCTCTGGTAGTGACCAAGGTTGAATTCTGTCCTGATGTTATTAACCAGTATTTGCTTGGATGTGGTAGCAAGACGATTAGGGAACTTTTGAAGACAAAAGTATGGAAACATCTAGCATATCTTGGATGGAAAATTGAGTGGACAGAAGATAGATATTTTCCTGGACGTGGACGCTACAGATACAAGTCACCTGATGCACAGGACGATAAGTTTTACACTTCAATTATTCAAGTTTTGACACATATGCAACTGGAGTCCAATATGAACACTGTGCAGCCCCAAGTTGATCAGAGTAGGATTCATTCTGCAAATGACACTAATCCTTCACATATGCTTTTAGATCAACCCCCAAACGACCAGGATGTAGATGTTTGTCCTCCAAATGAGAAAAGTGTTGGCCATGTTGATAGCGATGATCTAATGCAAACATTGTCCCAATTTCTTCAAAAAGAACCTGAGTTGCATACTGCTTCACCAGCTAGTATATCAAATGAGAATAGAAACCGCAAACACACCAGGGATTCAAAGGGCACCATGCCAAAGGGCCACATCAAAGGGTCATCTACAGAATGTCTAAGATCAAGCAAAAGGGTGCAGAAGGTGTCTACCTCAAGTCTGTCACACCAACGACCTCAAAATGTTCTGTCTTGGTTAATAGATAGCGGCGTGCTGATGCCAAGATGTAAGGTCTATTACCGGGCAGAAGGAGGCAGTAACACTGATGTGGCTGAGGGGAGAATTACTTATGATGGAATCAAGTGTAGCTGTTGCAAGAAAATATATGGTCTTGGGGGCTTTGTAAATCATGCAGGTGGAAGTGCTGACTGCAGGACTTCTGCTAGAATATTTTTGAAGAATGGTAGGTCACTCTTAGATTGCATGATAAAAGTAATGCACGATAGTAGAACAAGGGAAGATATGAACAGACCATGCAATGCTCTGTTTAAAGGAGAAAATGATGACATATGCTCTGTCTGTCAATATGGCGGTGAACTTATTTTATGTGACCAGTGTCCATCCGCATTTCATAGGACGTGTCTTGGTTTGGAGGATATCCCTCATGGTGACTGGTTTTGCCCATCATGTTGTTGCGGGATTTGCAACCAAACCAAAACAGAAGGGTCTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATCACGTTGGATGCTTGAAAAACAGAGACGAAGATCAGTCAGGAAGATATATGGAAAATTGGTTGTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTCCAAAGTCTATTAGGAAAGCCACTTATAGTGGGTTCGAACAATCTAACTTGGACATTGGTGAAGTTTAACAACTTCGAGGGTCGTGATGTTGGCAGTTCTGAGAATGACTTGTTGCCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGAACCCCTAAAGAACCCTCTCACTGGTAGAGATATCATTGATGATGTTATTTTCAACTCTAGGTCAGAGCTGAATCGATTGAATTTCCAGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAATTGATTAGTGTAGCAACTATTAGGGTGTTTGGACAGAAAGTAGCTGAGGTACCGCTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAGCTTGAGAAGGTAGAATCTGCCCGTAACCTCATGCAACTGGGAGTGGAGAGGCTAGTGTTGCCTGCCGTTCCTGTTGTGCTAGAAACTTGGACCAAATCTTTTGGCTTTGCACAGATGACAAATTTTGATAGGTCACAGTTCTCGGACTGTGCTTTCTTAGATTTTCAGGAAACCGTCATGTGCCAGAAGCTGCTGAGAAAGATTCCATCTCCCCAGTCAAGTTTAACAAGAGACACACAACGAAAACTGCATGATGTTTTGAGTCTTGATTGTAGAATTGAGTTTGAGAAGTCCAGTTCAGCATCAGAAGTGGAACAACCTGAATAG 3108 0.4202 MDGEKRYESTKRKRGSRKKKLFVNEKVEVKSMEEGFLGSWHPGTVVRCEKQKRYVKYDNILDDDGSKYLVDVVYVSAVLDGYSSSSDYSNEHGFIRPLPPPLEFGEKDLPFGLCVDVNYQEGWWEGVIFDHCNGMEERSVFFPDLGDEMKVETHQLRITQDWDEATENWKVRGKWVFLEVVQECEKESFVAVSVKQIWYDIRVRNDFDNIKHWTCNEKDLWRALVVEVVGDYYVLTLEEIFPALNLPEDFLKETPEPNSVEHTDNIHCHAGHSNVFGSDIGVSDSLMENGGESNLLDSNKKGCNIICFQEEYDKDPLTDGGYEKKIILQEEPVSPVQEIMPDASEVKSGASSCSKKRKRRRSVSTRWKPLVVTKVEFCPDVINQYLLGCGSKTIRELLKTKVWKHLAYLGWKIEWTEDRYFPGRGRYRYKSPDAQDDKFYTSIIQVLTHMQLESNMNTVQPQVDQSRIHSANDTNPSHMLLDQPPNDQDVDVCPPNEKSVGHVDSDDLMQTLSQFLQKEPELHTASPASISNENRNRKHTRDSKGTMPKGHIKGSSTECLRSSKRVQKVSTSSLSHQRPQNVLSWLIDSGVLMPRCKVYYRAEGGSNTDVAEGRITYDGIKCSCCKKIYGLGGFVNHAGGSADCRTSARIFLKNGRSLLDCMIKVMHDSRTREDMNRPCNALFKGENDDICSVCQYGGELILCDQCPSAFHRTCLGLEDIPHGDWFCPSCCCGICNQTKTEGSEDVLFLTCIQCEHKYHVGCLKNRDEDQSGRYMENWLCGKECEQIYAGLQSLLGKPLIVGSNNLTWTLVKFNNFEGRDVGSSENDLLPEKYSKLSVALSVMHECFEPLKNPLTGRDIIDDVIFNSRSELNRLNFQGFYTVLLEQNEELISVATIRVFGQKVAEVPLVGTRIQYRRLGMCRILMNELEKVESARNLMQLGVERLVLPAVPVVLETWTKSFGFAQMTNFDRSQFSDCAFLDFQETVMCQKLLRKIPSPQSSLTRDTQRKLHDVLSLDCRIEFEKSSSASEVEQPE 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00118 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 682 732 IPR013083 -
Spst8g00118 1035 Pfam PHD-finger 690 731 IPR019787 -
Spst8g00118 1035 SMART agenet_At_2 19 103 IPR014002 -
Spst8g00118 1035 SMART agenet_At_2 107 164 IPR014002 -
Spst8g00118 1035 SUPERFAMILY FYVE/PHD zinc finger 675 730 IPR011011 -
Spst8g00118 1035 SMART ring_2 691 730 IPR001841 -
Spst8g00118 1035 SMART ring_2 732 787 IPR001841 -
Spst8g00118 1035 CDD Tudor_Agenet_AtDUF_rpt1_3 21 100 - -
Spst8g00118 1035 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 877 969 IPR016181 -
Spst8g00118 1035 MobiDBLite consensus disorder prediction 534 548 - -
Spst8g00118 1035 Pfam Tify domain binding domain 613 664 IPR032308 -
Spst8g00118 1035 Pfam Agenet domain 25 100 IPR008395 -
Spst8g00118 1035 MobiDBLite consensus disorder prediction 520 563 - -
Spst8g00118 1035 PANTHER PHD FINGER PROTEIN 12 364 1005 IPR042163 GO:0003714|GO:0045892
Spst8g00118 1035 SMART PHD_3 732 784 IPR001965 -
Spst8g00118 1035 SMART PHD_3 690 731 IPR001965 -
Spst8g00118 1035 ProSiteProfiles Zinc finger PHD-type profile. 688 733 IPR019787 -
Spst8g00118 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 788 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00118 Spst-Chr8 918789 924547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00118 30 933 PHD Transcription Factor Family AT5G58610 36.864 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst8g00118 Agenet 1e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00118 - - vra:106763506 1707.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00118 8 918789 924547 Spst8g00118 8 918789 924547 ECH