Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00111 ATGTGCGGTGTTTCCAAGGGGATACCTTCTCAAATTGGCTTAGTCATGGATGATGAGTGTGGAAAAGAAGGGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGCGGCGGATGATCTAATCGGCTTTAAAGACGCAGTTGAAAAGGAGGGTGATGAAGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGCTGGATCAAAGAAAATAGGTTATGAGGAGAGGACTCCTCTCATGGTTTCTTCTATGTTTGGAAGCATTGAAGTATCAACTTATATTATTGGAACGGGTCGTGTTGATGTTAACCGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGCTCGATGCATCTGCTGATGTTAGTGCTGTTGATGCTGACGGTAACAGGCCAATTGACTTGATTGTCTCTGTGGCTAATTCATTCTTCAATCCAAGGGCCAGGGTGCTACGGGCCCTCCTGGAGGGTATCTGTGATGCCGATCAGGCATGTTTCTCCCTTCCAGAAGTGATTGACCAAATTGAGGAACAAAGGCAAGATATGACCCCACATCGTGCTTCAAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCATATTCTCATGACTGGACTGAGTGCCCCTTTGTTCACCCAGGGGAGAATGCAAGACGACGTGATCCAAGGAAGTACCATTACAGCTGTGTCCCTTGTCCCGAGTTTCGGAAGGGATCTTGCAGCAAAGGTGATACCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACAGGACCCGACTCTGCAAGGATGAGAGTGGATGTACAAGGAGAGTTTGTTTCTTTGCTCACAAGCCAGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGGTAGTGCTTCTGCATTGGAGATGGGTTCAGTTAGCCCAATTGCTCTTGGTTCTCCATCTGTGTTGATACCACCTGCCTCAACACCACCTTTGACACCATCTGGAGCATCTTCTCCTATTACTGGTTCCATTTGGTCTCAATCTAATGTTTCTGTCCCTACGTTGCAGCTGCCCAAAAGCAGATTGAAGACTGCATCGACTGCAAGAGGCATTGACTTAGATTTTGAACTGCTTGGACTTGAAACACATCGGCGCCGACATCAGCTAATGATTGATGAGATGTCTGGTCTTTCATCTCCTTCCAACTGGAAAAATTCAATGCCGAATAGTCCATCTTTTCATGTTTCTTTGAGTGATCACATTGGGGAGTTAAATAGGCTTTCAGGGGTGAAGCCTTCTAACCTTGAAGACACTTTTGGATCTCTTGAGCCGTCAATTTTGTCTAAATTCCATGGAATCTCACTTGATGTGGCAGGAGGACCTCAGTTACAATCTCCAACTGGACTGCAAATGCGTCCGAATTTGAACCAGCAGCTGGGAGGCTATTCATCCGGCCTTTCCACCTCAAACATGGCTGGATCGCGATCCTTCAGGGTTGATCCATCTGGTGAAGGAGCCTCAGTGGCTATGAATGCAAGAGCTGCTGCCTTTGCAAAGCGTAGCCACAGCTTTATTGAGCGAAGCATGGTGAACCATCATTCTGAGCTTCCTTCTCCAAAGCCCTCTACCTTCTCTAACTGGGGCTCACCTGGTGGAAAAGTGGATTGGGCCATAAATGGAGAAGAGCTGAATAAGCTGAGGAAATCCGCATCCTTTGGATTTCGAAGCAGCAGCAGTCCTCTTCCAAAGGACTCAAACAATGTGCCAGCAAACGTGGATGACGAGCCAGACGTGTCTTGGGTTAACTCACTTGTGAAGGATGCTCCACCAGAATCTGGTACTGAAGATCAGCGAAAACAATGCCATAATGGAACAGAAGCAATTCCAGCGTGGATGGAGCAAATGTACATGGATCAGGAGCAAATGGTGGCATGA 2070 0.4715 MCGVSKGIPSQIGLVMDDECGKEGMHHRISALLEFSAADDLIGFKDAVEKEGDEVDGVGLWYGRRAGSKKIGYEERTPLMVSSMFGSIEVSTYIIGTGRVDVNRASRSDGATALHCAVAGGSAASVEVVKLLLDASADVSAVDADGNRPIDLIVSVANSFFNPRARVLRALLEGICDADQACFSLPEVIDQIEEQRQDMTPHRASKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDTCEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSGSASALEMGSVSPIALGSPSVLIPPASTPPLTPSGASSPITGSIWSQSNVSVPTLQLPKSRLKTASTARGIDLDFELLGLETHRRRHQLMIDEMSGLSSPSNWKNSMPNSPSFHVSLSDHIGELNRLSGVKPSNLEDTFGSLEPSILSKFHGISLDVAGGPQLQSPTGLQMRPNLNQQLGGYSSGLSTSNMAGSRSFRVDPSGEGASVAMNARAAAFAKRSHSFIERSMVNHHSELPSPKPSTFSNWGSPGGKVDWAINGEELNKLRKSASFGFRSSSSPLPKDSNNVPANVDDEPDVSWVNSLVKDAPPESGTEDQRKQCHNGTEAIPAWMEQMYMDQEQMVA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00111 689 MobiDBLite consensus disorder prediction 617 641 - -
Spst8g00111 689 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Spst8g00111 689 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Spst8g00111 689 Pfam Ankyrin repeats (3 copies) 72 142 IPR002110 GO:0005515
Spst8g00111 689 Gene3D - 267 329 - -
Spst8g00111 689 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Spst8g00111 689 FunFam Zinc finger CCCH domain-containing protein 66 224 292 - -
Spst8g00111 689 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Spst8g00111 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 291 IPR000571 GO:0046872
Spst8g00111 689 ProSiteProfiles Zinc finger C3H1-type profile. 271 293 IPR000571 GO:0046872
Spst8g00111 689 SMART ANK_2a 109 141 IPR002110 GO:0005515
Spst8g00111 689 SMART ANK_2a 74 104 IPR002110 GO:0005515
Spst8g00111 689 PANTHER UNKEMPT FAMILY MEMBER 34 653 IPR045234 -
Spst8g00111 689 Gene3D - 44 173 IPR036770 -
Spst8g00111 689 MobiDBLite consensus disorder prediction 617 631 - -
Spst8g00111 689 SUPERFAMILY Ankyrin repeat 72 158 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00111 Spst-Chr8 877119 879188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00111 1 684 C2H2 Transcription Factor Family AT5G12850 37.516 4.10e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst8g00111 Ank_2 3.6e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00111 - - gmx:100819521 1170.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00111 8 877119 879188 Spst8g00111 8 877119 879188 ECH