Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00097 ATGAATCCGTTAACACTAGTGAAGCGCACTCAGAACATCAACGCCAGAGAAGCTGCACTCGGAATAGGCGAAGAAGCTTCGTGGCACACCAAGTACAAAGATTCCGCTTACGTATTCGTCGGTGGCATCCCCTTCGATCTTACCGAGGGTGACCTCCTCGCCGTTTTCGCCCAATACGGGGAGGTTGTTGATGTTAATCTCGTCAGAGACAAAGGCACTGGAAAATCAAAGGGTTTTGCGTTCCTTGCGTATGAGGATCAAAGAAGCACAAACCTTGCTGTGGATAATTTAAATGGGGCACAGGTTTTGGGGAGAATTATTAGGGTGGACCATGTTGACAAGTATAAAAAAAAGGAGGAGGAAGATGAGGAGACAGAGCGGCAGAAGAGGGAGGCACGAGGTGTTTGTCGTGCGTTCCAAAGGGGTGAATGTACTCGTGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAAGAGCTGCAAATACAGGTTGGGGTCATGAGGAAGACAATCCAAAATGGGGTCACGACAGATTTGAGGGTCCCAGAAAAGAGAGAAGACCTGGCAACAATCAGTCAGATCATATTCCAGAAACTAGAGACAGAGATTCACGTTCTAGAGCCCATGGCGATGGTGCTGGATTAAACAACCAACCTAAGAGAAGTGGGAGAGAAGAGAGGACAAAGCGGTGGCATGATGATGATGATAAATTTGAGGGAAGAGAACATAACAACAGAAGAGAAGAGAAGGGATCAAGAAGGTATGGAGATGATGAATTTGAACATAAGTCAAGAGAAGAGCGTTACAGGAGAGAAGAAAAAAAATCAAGAAAGGATGATTACAATGGTATGCCTGAGCCGAAAGATCATCGCAGAAGGGAAGACAAGAGGTCAATAAAGCCAGATGATGTTGAGTTTGAACCCAAGTTGAGAGATTTGGATACTAGGGAAGATAAAAGATCCCGGAGGATGGATGATGATGATTTTGTAAGCAAGGGAAGAGAACCTCAAAGTATCAGGGAAGACAGGAGATCTCGAATGCACAGTGAAGATGAATCTGCACCAAGGTCAAGAGAAGATTGTGATAGGAAGCAAGATAATAGATCATATAGAAATGATAATGATCGACCAGAGTCAAAAGTAAGACATGATTTTGACAGGAGAGAAGAGAGAAGGTCTAGAAGGTAA 1185 0.4439 MNPLTLVKRTQNINAREAALGIGEEASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGHEEDNPKWGHDRFEGPRKERRPGNNQSDHIPETRDRDSRSRAHGDGAGLNNQPKRSGREERTKRWHDDDDKFEGREHNNRREEKGSRRYGDDEFEHKSREERYRREEKKSRKDDYNGMPEPKDHRRREDKRSIKPDDVEFEPKLRDLDTREDKRSRRMDDDDFVSKGREPQSIREDRRSRMHSEDESAPRSREDCDRKQDNRSYRNDNDRPESKVRHDFDRREERRSRR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00097 394 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 267 - -
Spst8g00097 394 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Spst8g00097 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Spst8g00097 394 MobiDBLite consensus disorder prediction 219 394 - -
Spst8g00097 394 MobiDBLite consensus disorder prediction 161 394 - -
Spst8g00097 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Spst8g00097 394 Gene3D - 127 203 - -
Spst8g00097 394 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Spst8g00097 394 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Spst8g00097 394 Coils Coil 115 135 - -
Spst8g00097 394 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Spst8g00097 394 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Spst8g00097 394 Gene3D - 8 126 IPR012677 -
Spst8g00097 394 SMART rrm1_1 37 110 IPR000504 GO:0003723
Spst8g00097 394 MobiDBLite consensus disorder prediction 161 208 - -
Spst8g00097 394 FunFam Uncharacterized protein 127 204 - -
Spst8g00097 394 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Spst8g00097 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00097 Spst-Chr8 774332 778861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00097 35 109 Eukaryotic Initiation Factors Gene Family AT2G36660 29.333 9.58e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00097 K13107 - gmx:100814734 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00097 8 774332 778861 Spst8g00097 8 774332 778861 ECH