Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00093 ATGGATGTCATGGTAACGGGAGAAAGTCATGGTGGTAATGACCTTCAAATTTATGGCTGTGATGTTATAAACCCTCCTTTGACATCCACAGGCATAGATCAGTTCTTAAGTGGCCACTTCCCTCATCATCAACTACAGGCAAGGAACAGTTATGCAAGTGCTTTTTCTGAGGAGGCTTTTAAGTGGACACACATCAATCAAAACCCTACATTTTCCCTGGAAGATATGAAAATTTCATCTAAGATCACAAAAATGGTGGGAAGGAGAAGGAAGAAACAGCCTTCTGTGTCTTGGATCAAGGGACAGTGGAATAAGGAAGAGGATAGGAAACTGATAAGGTTGGTGAAGCAATATGGTGATAAAAAATGGGCTGAGATAGCTGAGCAGTTGGAGGGAAGGGTTGGCAAACAGTGTAGAGAAAGATGGAATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGGTGCTAGTGGACATGCATGCGAGGCTCGGAAATCGTTGGTGCGAAATAGCAAAACGCCTTCCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCCACCAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAGAGCTCTAATGGAAAACCACATTCCTCCATACTTGAAGATTACATCAGAAGCAAGACTCTAATCAGCACAAACCCTACACCTGGCATCATCACTGCCTCAACCACCTCTCACACAACACTCTCACAGGACAATGCAGCTAACCCTTTAAACCCTATGCTCTATGAACCTTTTGCTAACGAACTACTCTTCATGCACTCTAAGATCCCTTCAACTTCATACTTGGATTATTGTAACATGAATGTTGATGATGTGGGTGAGAGTGGATTTGTGTATTCTCTCCAATACCCAGATAACATGAACTTGAATGATAGTCTCTTTCCTAGACACACTCATCCTACCCCAGCTAATTACCTTTCTTCGGATCTATATTGTTCTCCCTTGTTCAACGTAGCACCCGGTTATGGGAATCAAAATCTGAACATCGATTTTCGGCATCAAGGTTGTTCACAAGTAAAAGGAGAGGTGGATTTAAGAGAGTTTGTTTATTCTTAG 1122 0.4171 MDVMVTGESHGGNDLQIYGCDVINPPLTSTGIDQFLSGHFPHHQLQARNSYASAFSEEAFKWTHINQNPTFSLEDMKISSKITKMVGRRRKKQPSVSWIKGQWNKEEDRKLIRLVKQYGDKKWAEIAEQLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERVLVDMHARLGNRWCEIAKRLPGRSENAIKNHWNATKRRQNSKRKHKKTKSSNGKPHSSILEDYIRSKTLISTNPTPGIITASTTSHTTLSQDNAANPLNPMLYEPFANELLFMHSKIPSTSYLDYCNMNVDDVGESGFVYSLQYPDNMNLNDSLFPRHTHPTPANYLSSDLYCSPLFNVAPGYGNQNLNIDFRHQGCSQVKGEVDLREFVYS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00093 373 CDD SANT 154 197 IPR001005 -
Spst8g00093 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 201 IPR017930 -
Spst8g00093 373 ProSiteProfiles Myb-like domain profile. 100 146 IPR001005 -
Spst8g00093 373 PANTHER MYB PROTEIN-RELATED 93 214 - -
Spst8g00093 373 CDD SANT 103 146 IPR001005 -
Spst8g00093 373 MobiDBLite consensus disorder prediction 193 219 - -
Spst8g00093 373 FunFam Transcription factor MYB119 153 216 - -
Spst8g00093 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 150 IPR017930 -
Spst8g00093 373 Gene3D - 99 151 - -
Spst8g00093 373 FunFam Transcriptional activator Myb isoform A 99 152 - -
Spst8g00093 373 SMART sant 99 148 IPR001005 -
Spst8g00093 373 SMART sant 151 199 IPR001005 -
Spst8g00093 373 MobiDBLite consensus disorder prediction 196 213 - -
Spst8g00093 373 SUPERFAMILY Homeodomain-like 97 193 IPR009057 -
Spst8g00093 373 ProSiteProfiles Myb-like domain profile. 147 197 IPR001005 -
Spst8g00093 373 Gene3D - 153 220 - -
Spst8g00093 373 Pfam Myb-like DNA-binding domain 103 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00093 Spst-Chr8 758092 760554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00093 91 339 MYB Transcription Factor Family AT5G11050 47.232 2.36e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g00093 Myb_DNA-bind_6 2.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00093 K09422 - gmx:102668713 509.99