Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00085 ATGAAGTGGGAAACTATAATCCTTTCTCCTACACCTTCTTCTCCAAACTCCAACACCAATTGGTTGGTTGAAAATAATAGGAGCACAAAATGGACCCCTGAAGAGAACAAACTCTTTGAAAATGCTCTTGCAGTACATGATAAGGACACCCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCAGGAAAGACTGTGGTTGACGTGATCAGGCAGTACAAGGAACTAGAAGTTGATGTTAGCAATATAGAAGCTGGGTTGATTCCAGTTCCTGGCTATAGCACTGCTACCTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGTTATGATGGGTTCAAAGGAAGTGGAAAGAGATCATCCTCAGTGAGACCTCATGAGCAGGAGAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTCTACTGGGTCTGAAGAAGTATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTGATCACTAGAACCCCAACACAGGTGGCTAGCCATGCTCAGAAATACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATACATGACATAACAACAGTGAATCTCACTGAAACCACCACAACTTCTTCAGAAGACACCAACAGATCCACTTCATCACATGTGCTTTCACAGCAGCAGCCAAATTCTACTCCAACTACACCCAGAACTCATTTTCAGTGGAGTAATCAGTCAGCCACAGGAATAGCTATGACTTTCAACCCTGCTCATGAAAGAGTCTTCATGTCTCCTTATGGTGCTAACACCTTTGGGGTTAAAATGGAAGGACAGAATCTGCACAATGAGTCTTCTTACTTGGGACCTCAGACACAGAACATGGTTTTCCAAATGCAGCAGCCGTCACAACACTAG 912 0.4397 MKWETIILSPTPSSPNSNTNWLVENNRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVVDVIRQYKELEVDVSNIEAGLIPVPGYSTATSPFTLDWVNTPGYDGFKGSGKRSSSVRPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTTTSSEDTNRSTSSHVLSQQQPNSTPTTPRTHFQWSNQSATGIAMTFNPAHERVFMSPYGANTFGVKMEGQNLHNESSYLGPQTQNMVFQMQQPSQH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00085 303 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Spst8g00085 303 CDD SANT 30 76 IPR001005 -
Spst8g00085 303 MobiDBLite consensus disorder prediction 1 20 - -
Spst8g00085 303 Gene3D - 23 90 - -
Spst8g00085 303 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Spst8g00085 303 SUPERFAMILY Homeodomain-like 29 81 IPR009057 -
Spst8g00085 303 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Spst8g00085 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Spst8g00085 303 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Spst8g00085 303 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 255 IPR043363 -
Spst8g00085 303 FunFam Transcription factor SRM1 23 90 - -
Spst8g00085 303 SMART sant 27 79 IPR001005 -
Spst8g00085 303 SMART sant 132 182 IPR001005 -
Spst8g00085 303 CDD SANT 135 180 IPR001005 -
Spst8g00085 303 MobiDBLite consensus disorder prediction 120 134 - -
Spst8g00085 303 ProSiteProfiles SANT domain profile. 26 81 IPR017884 -
Spst8g00085 303 FunFam transcription factor MYB1R1 134 185 - -
Spst8g00085 303 Gene3D - 134 184 - -
Spst8g00085 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Spst8g00085 303 MobiDBLite consensus disorder prediction 115 134 - -
Spst8g00085 303 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Spst8g00085 303 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Spst8g00085 303 MobiDBLite consensus disorder prediction 206 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00085 Spst-Chr8 653222 654469 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g00085 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00085 - - gmx:778034 522.316