Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00059 ATGGGTGCCGTCGTCGAGTGTTACCCGCCGCCGCGGACGGCGGTTCTATCCCTCAACACGCTGCCGCTTGGGTTCCGTTTCCGTCCCACCGATGAAGAGCTTATTGATTACTACCTGCGCTCGAAGATCAATGGAAATGGGGACGATGTTTGGGTTATCCGTGAAATTGATGTCTGCAAATGGGAGCCTTGGGATTTACCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGACCGGAAGTATCCCAACGGGCACAGATTGAACCGAGCTACGAACCACGGGTATTGGAAAGCAACGGGGAAGGATAGAAAGATTAAGTCTGGTTCCGCTTTGATTGGAATGAAGAAGACTCTTGTTTTCTATACTGGTCGTGCTCCGAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTATAGGCCAACCCTAAAGGAGCTCGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGATTATTTAAGAAACATGATGAGAGTCTTGAAGGTTCAAATGGTGAAGATGTGGAGCGGACTGCTTCAACTCCTATGACTGCCAATTACTCTCCAGATGAAATACAATCTGATTCAGCTCTGGTTCCAGCATCTTCTTCACAGGTTACTGAGGATGATAGTAAGCCTCTAGCAGCTATCCCTGAGAACTCTGAGGAAGCAATATCCAACATTATAACTCCAGTTGATTGCCATAGTGATGGATGTGATGCTCCTGAAGGACAAAATCAAATTGTAGAACCAGCTGCGGAGCAGGATCAGCCATTTAACGTGGACATGTTTTATGACCCAACAAACCAGCAATTAGATGACAAATTATTCTCCCCAGTCCATGCACATTTCCCACCAGAAATTTACTATCAAGCAAACAATCAGTCAGAATTTCAGTATGGTACAAATGATAATATGTCCGACTTCTTTGACTCAGTTGTTAATTGGGATGCAATATCCTATGATACTAGTAGTCTAGATCTGAGCTCATCCTTCCTCAATGTCAAGGACAACGGATCAGGCAGTGACTCAGATGTGGAAATGGCCAATATGACGCATCTGCAGGCATTACATGGTTATCCTAAGGAGGCAGTTGAGCAGAAGAGCAGTGTACGATCATATCTGAACAGCTCCCCGATGGATTTCTCAAATGATGTCCCTATGGGCCAAGCGCCCATTACGGTCAACAATTATGAGCAAACAAGAGACTTTGATGCATTTGTTAATGGTGACACTGGAATTAGAATAAGGTCTCGTCAAGGACGAAACGAACAGCCAAACATGAATGGAGTGGTACAATCTCAAGGTATTGCACCAAGGAGAATACGATTAGGAGTTGTTAGGCGTCCGTTTACTTCCCAGGAGACGGCAAAAGATGGAAGTTGTGCTTGTGCACCGGAAGACCACAATTCAAAAACCATCATTACTAGGGAGAGAAAAGCTCCAGAAAACCATGTTGGCAATCAGAGTTTCGCTGTTACTAGTGATGTTGATGAACCAGAGAAGGAATCTCCTGAGTCATCTGACTCAGAAAAATTTACTGAGCAACATGTTGCAACTGCAGAATCCATCTTGGGGTCGAAAGACCTCCTACAGAGCAGAAGGTTCCGCTACAGCTCAAAGGTTTCGTCTAACCGTGCCATGTGGTCTTATGTTCTTGCAGTTTCTGCGACTGCGTTGGTTTCAGTAATATTCCTTGTTAATATATGGCCATATGTGAGATCTTGA 1755 0.4507 MGAVVECYPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSALIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEGSNGEDVERTASTPMTANYSPDEIQSDSALVPASSSQVTEDDSKPLAAIPENSEEAISNIITPVDCHSDGCDAPEGQNQIVEPAAEQDQPFNVDMFYDPTNQQLDDKLFSPVHAHFPPEIYYQANNQSEFQYGTNDNMSDFFDSVVNWDAISYDTSSLDLSSSFLNVKDNGSGSDSDVEMANMTHLQALHGYPKEAVEQKSSVRSYLNSSPMDFSNDVPMGQAPITVNNYEQTRDFDAFVNGDTGIRIRSRQGRNEQPNMNGVVQSQGIAPRRIRLGVVRRPFTSQETAKDGSCACAPEDHNSKTIITRERKAPENHVGNQSFAVTSDVDEPEKESPESSDSEKFTEQHVATAESILGSKDLLQSRRFRYSSKVSSNRAMWSYVLAVSATALVSVIFLVNIWPYVRS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00059 584 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Spst8g00059 584 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 262 - -
Spst8g00059 584 MobiDBLite consensus disorder prediction 505 523 - -
Spst8g00059 584 MobiDBLite consensus disorder prediction 182 219 - -
Spst8g00059 584 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Spst8g00059 584 FunFam Nac domain-containing protein 86 30 174 - -
Spst8g00059 584 MobiDBLite consensus disorder prediction 487 523 - -
Spst8g00059 584 MobiDBLite consensus disorder prediction 175 221 - -
Spst8g00059 584 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Spst8g00059 584 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00059 Spst-Chr8 464051 467368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00059 14 453 NAC Transcription Factor Family AT4G35580 44.222 4.34e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst8g00059 NAM 5.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00059 - - gmx:100778903 955.666