Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00053 ATGCTACATAAATATCGTGTTGTATTTAGCCTGGGGTATTCGGCATGCTTTAGCATTTCTTTAGAAGATTCACAGCTCGAGGCAGGAGCATTTGTGCCTCGATTTAGAGTCCTCTTGCTACTTGGGAAGTGCAAGATGCAAATACCAACGTCTTTCACCAAGTTCTTCAATGGAATAACACCATGCAAAGCCACATTGGTAGATCACGATGGAAAATCTTGGGATGTTAACTTGGAGAATATTGACGGTGGCTTGGTTTTTGAAAATGGGTGGGAGAAATTTGCTAAGGAGAGAGATTTAGAAGATGGGGACTTTCTGGTTTTTCAGTATGATGGCATATTTACGTTTAGTGTGAAGGTATTTTCGAAAACTGGGTGCAGGAAAGTGGCTGCACCTCCAAGTGGAGGACAAATTTTAACCACTGTGAAGTTGGAACAAGATTATGAGCAGACAAGTGGCCAAGTACAGAACGGTGTTAAACGGAAACACTCATCACTGAGTCCCGAAATAAACCAGAAATCAGTGTTAGGAGGTGCATGTTCATCCGAAGGAACTCGGCAGCACAAGTTAAGAAAAGTAAAGGAAGAGAAAGATGACTACAGCGAGATGAATGTTGCTGTGCCAAAGAGTGAACTTCCTAGGAGAGTGGTGAAGGAGATGAAAATCAAGCTGAATCGGAAAATAAGTCTGAGAGATGAGAATGACAGAGTATGGCCGGCGTCGATCCATTCCACCGGGAAGAAAGATCGTCACTTTTTGGGAGGTGGATGGTATGATTTCAAGCGGAGTCAGAACATTGAAGAAGGCTGTAAATGCGATTTTGAGTTTGTTGTTGACAAAGCAAACGTAGCCAGAGAACTGCTTGTGCGCGTACGTTCTGATTCTTATTGGTGA 894 0.4295 MLHKYRVVFSLGYSACFSISLEDSQLEAGAFVPRFRVLLLLGKCKMQIPTSFTKFFNGITPCKATLVDHDGKSWDVNLENIDGGLVFENGWEKFAKERDLEDGDFLVFQYDGIFTFSVKVFSKTGCRKVAAPPSGGQILTTVKLEQDYEQTSGQVQNGVKRKHSSLSPEINQKSVLGGACSSEGTRQHKLRKVKEEKDDYSEMNVAVPKSELPRRVVKEMKIKLNRKISLRDENDRVWPASIHSTGKKDRHFLGGGWYDFKRSQNIEEGCKCDFEFVVDKANVARELLVRVRSDSYW 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00053 297 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Spst8g00053 297 SMART B3_2 35 124 IPR003340 GO:0003677
Spst8g00053 297 SMART B3_2 204 295 IPR003340 GO:0003677
Spst8g00053 297 Gene3D - 190 289 IPR015300 -
Spst8g00053 297 Gene3D - 32 126 IPR015300 -
Spst8g00053 297 PANTHER B3 DOMAIN-CONTAINING 35 280 - -
Spst8g00053 297 Pfam B3 DNA binding domain 212 292 IPR003340 GO:0003677
Spst8g00053 297 Pfam B3 DNA binding domain 43 123 IPR003340 GO:0003677
Spst8g00053 297 SUPERFAMILY DNA-binding pseudobarrel domain 42 126 IPR015300 -
Spst8g00053 297 CDD B3_DNA 212 277 IPR003340 GO:0003677
Spst8g00053 297 ProSiteProfiles B3 DNA-binding domain profile. 212 295 IPR003340 GO:0003677
Spst8g00053 297 SUPERFAMILY DNA-binding pseudobarrel domain 210 277 IPR015300 -
Spst8g00053 297 CDD B3_DNA 33 122 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00053 Spst-Chr8 406074 410022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00053 30 293 B3 DNA Binding Superfamily AT5G66980 28.616 4.68e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst8g00053 B3 9.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00053 - - gmx:102669908 302.753