Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00034 ATGAAGTTCCAATTCCATGCTGTTTCATTTGTTCTGCTATGCTTCACATCATTTGGCCTGATTTTAGCTGACTTGAACTCCGACAGACAAGCTCTCCTTGAGTTCTTTTCAAATGTTCCACATGCCCCAAGGCTAAATTGGAATGAGTCTACTCCAATTTGTACTTCTTGGGCTGGTGTGACTTGCAACCAAAATGAAACTAGTGTCATAAGCATCCACCTTCCAGGGGCAGGTTTCAAGGGCTCCATTCCAGAGAACAGCCTAGGAAAACTAGATTCTCTAAAAATTCTGAGCCTCCACTCCAATGGCCTTAGAGGAAACCTTCCTTCAGACATCCTCTCTATTCCTTCACTCCAATATGTAAACCTGCAGCAAAATAACTTCTCTGGTCTAATCCCTTCTTCTATCTCCCCTAAACTCGTAGCATTGGATATTTCTTATAACAATTTTTCTGGAAGTATCCCACATATTTTTCAGAATCTCAGTAGACTCACCTGGTTGTATCTCCAAAACAACTCTCTCTCTGGGGCTATCCCTGACATCAACCTTCCAAGCCTCAAGTATTTGAATTTGAGTTATAACAACTTGAATGGCTCAATTCCAAATTCCATCAACAATTATCCATACACTTCTTTTGCTGGGAACTCTCACTTGTGTGGACCACCTCTCAATAACTGTTCTGAAGCCTCCGTTCCATCTTCTTCTTCTTCCTCTCTTTCTCCTTCTCCTGTTTATCAACCACTCTCTCCAGCACCTGCTCCCCAATATAGAAGTGCTACTCCTTCAAAGAGTTACTTTGGCCTAGCTTCTATCATTGCACTAGCAATTGGGAGCTGTGCCTTCCTTTCTCTCCTAGTTTTGGTGATCTTTGTATGTTGTTTGAAGAGCAACAAGAGTCAAAGCAGTGGCATACTTACTGGAAAGGCACCTTGTGCTGGAAAGACTGAGGTTTCAAAGAGTTTTGGGAGTGGGGTTCAAGAGGTTGACAAGAACAGGTTGTTTTTCTTTGATGGTTGCTCTTACAGCTTTGATCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAAGGGAGCTATGGAACAACATATAGGGCTGCTTTGGAGGATGGAACTACAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTAGTTGGACAAAAGGAGTTTGAACAGCAGATGGAGATTGTAGGAAGAATTGGTAGGCACCCCAATGTCGTGCCCCTTCGAGCTTTTTACTTTTCCAAAGATGAGAAACTTCTAGTCTATGACTACATGCCTGGAGGCAGCTTGTTTTCCTTGTTGCATGGAAACAGAGGCATGGGAAGAGCTCCATTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGCTGCAAAGGGAATTGCTTCCATTCACACTGACCACATGGATTCAAAACTTACTCATGGCAACATCAAATCCTCCAATGTGCTCATAACCCAAGAACATGATGGCTGCATCACTGATGTAGGACTCACTCCAATGCTGACCACCCAATCAACCATGTCAAGGGCCAACGGCTACCGTGCTCCTGAAGTAACCGAGTACAGGAGGATCACTCAGAAGTCTGATGTTTACAGTTTTGGAGTGCTCCTTCTTGAAATGCTCACAGGCAAGGTCCCACTGGGATATCCTGGCTATGATGACATGGTTGATCTTCCAATGTGGGTGAGGTCTGTGGTTCGAGAGGAATGGACAGCTGAAGTTTTTGATGAGGAGCTGCTTAGAGGGCAGTATTTTGAAGAAGAAATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTGGCAAAGGTGGCAGATAACAGGCCAAAAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGACTTCCTGAATTGAAGAACCGTAACACATCATCTGACTCTGAATCTAATATACAAACTCCATGA 1932 0.4337 MKFQFHAVSFVLLCFTSFGLILADLNSDRQALLEFFSNVPHAPRLNWNESTPICTSWAGVTCNQNETSVISIHLPGAGFKGSIPENSLGKLDSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSISPKLVALDISYNNFSGSIPHIFQNLSRLTWLYLQNNSLSGAIPDINLPSLKYLNLSYNNLNGSIPNSINNYPYTSFAGNSHLCGPPLNNCSEASVPSSSSSSLSPSPVYQPLSPAPAPQYRSATPSKSYFGLASIIALAIGSCAFLSLLVLVIFVCCLKSNKSQSSGILTGKAPCAGKTEVSKSFGSGVQEVDKNRLFFFDGCSYSFDLEDLLKASAEVLGKGSYGTTYRAALEDGTTVVVKRLREVLVGQKEFEQQMEIVGRIGRHPNVVPLRAFYFSKDEKLLVYDYMPGGSLFSLLHGNRGMGRAPLDWDSRMKIALGAAKGIASIHTDHMDSKLTHGNIKSSNVLITQEHDGCITDVGLTPMLTTQSTMSRANGYRAPEVTEYRRITQKSDVYSFGVLLLEMLTGKVPLGYPGYDDMVDLPMWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKVADNRPKMDETVRNIEEIRLPELKNRNTSSDSESNIQTP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00034 643 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Spst8g00034 643 FunFam pollen receptor-like kinase 1 318 425 - -
Spst8g00034 643 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Spst8g00034 643 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Spst8g00034 643 Pfam Protein tyrosine and serine/threonine kinase 354 618 IPR001245 GO:0004672|GO:0006468
Spst8g00034 643 ProSiteProfiles Protein kinase domain profile. 350 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00034 643 Gene3D Phosphorylase Kinase; domain 1 316 425 - -
Spst8g00034 643 PANTHER OS05G0588300 PROTEIN 10 634 - -
Spst8g00034 643 SUPERFAMILY Protein kinase-like (PK-like) 354 618 IPR011009 -
Spst8g00034 643 SUPERFAMILY L domain-like 38 223 - -
Spst8g00034 643 FunFam Leucine-rich repeat receptor-like protein kinase 141 226 - -
Spst8g00034 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 426 633 - -
Spst8g00034 643 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Spst8g00034 643 FunFam Leucine-rich repeat receptor-like kinase 28 140 - -
Spst8g00034 643 Gene3D Ribonuclease Inhibitor 139 228 IPR032675 -
Spst8g00034 643 Gene3D Transferase(Phosphotransferase) domain 1 426 641 - -
Spst8g00034 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00034 Spst-Chr8 298642 301091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00034 8 641 Receptor kinase-like Gene Family AT5G58300 57.188 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst8g00034 PK_Tyr_Ser-Thr 7.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00034 - - vum:124839146 1157.9