LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g00032	ATGGTTTCCTCTCAGTTCTCTGTCTTAAATGGAAATAGTTCATCAAGGTCTTTCCTGAATCAGTTGGTTCTACCAAATGGTCCACCTGATCTTTTGCCATCTTCGACTTGTGAGGATTTTGATTTTTCTGATGTGTTTGGTCCATCTCCTGTTGAAGCCTCAATAACACTAAGCTCCGAGAAACATGGAGATTCCGTAGCTACACGAGGTTCAGATGAAAAGATTTACAACGATCCTGATTGCATTCACATCCGCTCTCAATCTTTATTGGCTCCCATAACTTGTATTGGTCAGTCATTGCAGCTTAGCAAGCTCACCTTACATGAGACAGAAGATGAATTGGATCTTGAGGAGGTCTTAATAGAAACACAGAAAGAACTTAAGGAACATTCTGTTAACAATGCAGCAGTGGAGAAAAATAATTTATACTTCAATGATTATTGTCTGAATAATCAGACTATTGGAGTTGAGGATTTTGAAGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGAAAGGTGTATCAGGTGAGGAGGGCAGGTAGTTCTGAAATATATGCTATGAAGGTGATGCGCAAGGATAAGATCATGGAGAGAAACCATGCTGAATATGTAAAATCTGAAAGGGATATACTGACAAAGGTGGACAACCCATTTGTTGTGCGGCTCAGATACGCTTTCCAAACCAAATATAGGCTGTACCTTGTGCTTGATTTTGTCAATGGTGGCCACCTTTTCTTTCAGCTCTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCTGCAGAGATTATTTGTGCCGTTTCTTATCTTCATGCAAATCATATAATGCACAGGGATCTTAAGCCTGAAAATATTCTTCTCGATGCAGATGGTCATGCACTGTTAACAGATTTTGGCCTGGCTAAGAAATTCAATGAGACTGAAAGATCTAATTCTATGTGTGGAACTGTAGAGTACATGGCCCCTGAAATTGTAATGGGAAAAGGCCATGATAAGGCAGCTGATTGGTGGAGTGTGGGAATTTTAATATATGAAATGCTTACAGGAAAGCCTCCTTTCGCGGGCGGAAATAGACATAAGATCCAGCAGAAGATAATTAAAGACAAAATCAAGCTCCCAGCATTTTTGTCAAATGAAGCACATTCACTGTTAAAAGGGCTGTTGCAGAAAGATGTCAGCAAACGCCTTGGCAGTGGATTAAGAAGCAGTGAGGAGATTAAAAGCCACAAGTGGTTTAAGTCAGTTAACTGGAAAAAACTGGAAGCCCGTGAAATTAGGCCAAGCTTTGTCCCTAATGTTGCTGGGAAGCACTGTGTTGCTAACTTCGAGGAGCGGTGGACTACTATGCCTTTGGTGGATTCTCCAGCTTCTAGTCCCAAAAAGGATGACAATACCTTCAAGAAGTTCTCATATACTGGTATTCCAATCGAGTAA	1443	0.4096	MVSSQFSVLNGNSSSRSFLNQLVLPNGPPDLLPSSTCEDFDFSDVFGPSPVEASITLSSEKHGDSVATRGSDEKIYNDPDCIHIRSQSLLAPITCIGQSLQLSKLTLHETEDELDLEEVLIETQKELKEHSVNNAAVEKNNLYFNDYCLNNQTIGVEDFEVLKVVGQGAFGKVYQVRRAGSSEIYAMKVMRKDKIMERNHAEYVKSERDILTKVDNPFVVRLRYAFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSYLHANHIMHRDLKPENILLDADGHALLTDFGLAKKFNETERSNSMCGTVEYMAPEIVMGKGHDKAADWWSVGILIYEMLTGKPPFAGGNRHKIQQKIIKDKIKLPAFLSNEAHSLLKGLLQKDVSKRLGSGLRSSEEIKSHKWFKSVNWKKLEAREIRPSFVPNVAGKHCVANFEERWTTMPLVDSPASSPKKDDNTFKKFSYTGIPIE	480

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst8g00032	480	CDD	STKc_AGC	165	415	IPR045270	GO:0004674\|GO:0005524
Spst8g00032	480	Gene3D	Transferase(Phosphotransferase) domain 1	239	434	-	-
Spst8g00032	480	PANTHER	RIBOSOMAL PROTEIN S6 KINASE	114	475	-	-
Spst8g00032	480	FunFam	Non-specific serine/threonine protein kinase	156	261	-	-
Spst8g00032	480	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	278	290	IPR008271	GO:0004672\|GO:0006468
Spst8g00032	480	Coils	Coil	120	140	-	-
Spst8g00032	480	SMART	serkin_6	159	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Spst8g00032	480	ProSiteProfiles	AGC-kinase C-terminal domain profile.	416	480	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
Spst8g00032	480	ProSitePatterns	Protein kinases ATP-binding region signature.	165	188	IPR017441	GO:0005524
Spst8g00032	480	SMART	pkinase_C_6	416	476	IPR000961	GO:0004674\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g00032	Spst-Chr8	285502	293134	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst8g00032	1	478	AGC Kinase Gene Family	AT3G08720	62.656	0.0	589

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC-Pl	Spst8g00032		Pkinase	1.3e-74	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g00032	K04688		-	gmx:100803509	811.216

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