Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00027 ATGGGGAGGCGAAAAGGCAAACCACATCGAGCAGGTGGGATAATACTAGAGACAAATGCTTCTGCTGAGACAGTATTGGATAAACAAAATATTGTAGAAGGAGGGGAAGAAGCAAAAGGTGATTCTGGTGGCATAGATAAGCCTTATTTTGTGGAGGTTGCTCGGGTGGATTGGTTGTCGAGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAATTTGAGTGAAGATTTTTCTGGTTTTGAATTGTCCGAAGATTTTTGTCGGGATCAGCAGTACTGGTTAAGATTTCGAGTATGTAATGTCAGTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTCTTACCCTATACTGATATTCATCTAGAGTTTGTGCGAAGAGTTGCCGTTGACCATGTGGAAACATGTACAGTGATTGTATCTGGTATTTTTGATGGACCCGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACATTGAGGCCAGTTCTTGGGGTTAGGCTTTCTGAGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTGAAGAACGCCTTTCATGCATGTGAGTCACTTCTTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTGAACGTAATGTCTTGGTTGCGTCCAGAAATAATGACTTCTGAAGTTAGATATGGGTTCTTTAGCTGTATGAAAATGGATGTTGATCCACAGACAGAGATGGAAGATGACATTTGCAAAGCAAGGAAACATGCAAGGTTTGATCCTGCAGGTTTATATGAAGCCATCAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAAAGGCGCGCAGCTTTCTGGATGGTGGAACGAGAGAAAGCAGTGGAAGAAAGTAAGGTTGAAAGAGAAAGAAAGCAGTTTCATTATCCATTATGTATACCTGTGGATTTTCTGGACAACAAGTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTATGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTACTCACCGCAGATCAGCATCTGGCAGTGACATATTATTTGATTTAGACCCCCAAATTAATGGGGACCAAAACGTCACTTTGAAAAGACTTAAAAGAGAGCGTGTGGAGTGTATATGTGGAGCTGTGAGTGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGACTGTGTTGGTTATTCATCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGCGAAAGCAGGACATATAAAACTACCATGGCCGTGAGGGATGGAGAATATGTATGTCGTATGTGCTCTGAACTGATACAAGCTACAGAATCTCCTATTGCCTCTGGCGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATCATATGGAGGATTGGATCCTCCTACTCCGTAAATTCTGGCCATACACATCAAGGCTCCTTGAAAACTTGTGTTTATGAAGGAGTGCGAGAAACGTCTTTTTCTCATATGTCTGTGATGGATATCAGTGATCTTGCCAGCGCTGACATTGTATTAACTACATATGATGTGCTTAGAGAGGATCTGTCCCACGATTCTGATAGGCATGTAGGTGATCGGCACTTTCTGAGGTTTCAGAAAAGGTACCCTGTCATCCCAACTCTTCTTACAAGAATATATTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAGAGTAATACTACAGCTTCCACTGAAATGGCTCTAAGACTTCATTCAAAGTATCGTTGGTGCATTACTGGTACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTCTGAGGTTCCTTGTGGCTAGTCCTTTTGATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTGGGAGCTATGCAATTCACACACAAAGTTTTGAAACAAATAATGTGGCGTTCTTCTAAAGAACATGTTGCTGATGAATTGGACCTTCCTTCCCAAGAAGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAAATTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGCGAAATGATATTCTTAATAGAAAAGGCCCAGATTCTATCTCTTTGCGAGGTTCCACTGATCCTTTAATCACTCATACCGAGGCAGGGAAGCTACTGAATGCTTTGCTAAAGCTTCGTCAAGCTTGTTGTCATCCCCAAGTTGGAAGTTCTGGGTTGCGCTCCCTGCAGCAGACACCAATGACTATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAAGAAGCTCTAAGGAAGTTAGTTATTGCTCTGAATGCGCTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATCATTGTATAGTGAAGCTCTTACTTTGGCTGGAGAGCACTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTGAAATACTCCCGCTTGCTTCAAACATGGCTTTAATATTGGCATCCAAAAGAAAGCAGTTCTCTGAAACTTCCAAATTTAAAATGACCAAAAGGCATTTAATTGTAAATGATGACAGTTTTCATTTGAAGAGGCAAAGAATTAGTGGTTGTGATGACGAAAATGTAACAGTGCCATCTGCAGATCCATCAAATGTTAGTCATTCAGAAAATGACTTAAAGGAGGATCCGGAATATGACAATTTATCAGCCAACTCTGTCAAATCTCTGATAGCAGAATGCGAAGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCAAAGCTATCTGCAGCCGAGCAGGAGTTTCAAAATTCTTACATGCAGGTCTGTAATGCATATCGTGACAGAAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAACAAAGATTTCTCTGCTGAGTTGATTAGAAAGATTGAAGAAGCTATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTGCTCGCTTCCGAAGCATAAGCTCTCTGAAATATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGCTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGTCCGCCGTGTGTTTTGTGTGAACTAGATGAATTGTTTCAGGGTTATGAAGCAAGACTCTTCATTCTTAAGAATGAACGAGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCCCTGAATCATTTCCTCTCAAAGTTATCACAATCTAGTAACAGTTCTACAGCATCTGATATCGGTCATGAGGAATCAAAGAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAAATCAGCATCTGAGTTGGAGTTAATTCTTGGAGTAATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGACAGTGTCTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGATCTTTGGCATTAGCTCAAGCTCAGTATCTACGTGCACATGATGAGATTAAGATGGCTGTTTCCCGTCTGCACCTAAGGGCAAGCGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTAGTTGCAGCTAGCTCGAACTTTTCCCATGATAAGTTTATGTCATTGACCATGTTATCCCAGACAAAAGGAAAACTACGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAGACTGCAATGTGAAAGTCCAAATAGTTCTTCAATCACACGAGAGACAACTGCAATGTCAAACTCTACAGAAGAGAAAGCTGTACTTGTATCTAAAACTGATGATGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTTTTTCAATGTGGGCATCTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTGAAAACAGCAAGCTTCACAATTGGGTGATGTGCCCAACTTGTCGGCAACATACTGATTTTGGAAACATTGCCTATGCTGTTGATTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTGACAGCAGTGACAAATGTGAAGAATCCATTAGTGTCAAAGGGTCATATGGAACTAAGATTGAAGCAGTAACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAGAGCAAAAGTTCTTGTATTTTCTAGTTGGAATGATGTACTTGATGTATTGGAGCATTCCTTTGCTGCCAATAACATTAGCTACATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGGCGCAAAAGGATGTGAGGGGTCAACTCCAAAATTTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTGCTCAATCCAGCAGCTGAAGCACAAGCAATCAGTCGAGTACATCGGATTGGACAAAAAAATAAGAGCCTCATTCATCGTTTCATTGTAAAAAACACGGTTGAAGATAGCATATATAAACTTAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGGAACACTAAAAATCAAGATCAACCTGTTTTGACCTTGAAGGATGTGGAAGCCTTGCTCACTAGAGCACCACTTACAATGCCAGAAAGTGAAGAAAATCATAACACAAGCACAAATCTTAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 5043 0.4043 MGRRKGKPHRAGGIILETNASAETVLDKQNIVEGGEEAKGDSGGIDKPYFVEVARVDWLSSEHLDISEVVLRDLNLSEDFSGFELSEDFCRDQQYWLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFVRRVAVDHVETCTVIVSGIFDGPDEGVTGLLHLASLKFVTLRPVLGVRLSEEISSLRVRVEVLKNAFHACESLLDTSRQLWKKSMVNVMSWLRPEIMTSEVRYGFFSCMKMDVDPQTEMEDDICKARKHARFDPAGLYEAIKPSKAEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEESKVERERKQFHYPLCIPVDFLDNKSQMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFTHRRSASGSDILFDLDPQINGDQNVTLKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSSKGKSLKSKQGCESRTYKTTMAVRDGEYVCRMCSELIQATESPIASGATLIVCPAPILPQWHDEIIWRIGSSYSVNSGHTHQGSLKTCVYEGVRETSFSHMSVMDISDLASADIVLTTYDVLREDLSHDSDRHVGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDKYRWWTDVIRDPYEKGDVGAMQFTHKVLKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHENCVRDAHEVIESLRNDILNRKGPDSISLRGSTDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATSLYSEALTLAGEHSEDFRLDPLLNIHIHHNLAEILPLASNMALILASKRKQFSETSKFKMTKRHLIVNDDSFHLKRQRISGCDDENVTVPSADPSNVSHSENDLKEDPEYDNLSANSVKSLIAECEDSKQKYLSVFSSKLSAAEQEFQNSYMQVCNAYRDRRTDQNTFWWLEALHHAEQNKDFSAELIRKIEEAISGTSNNSKSSRIAARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNCDGPPCVLCELDELFQGYEARLFILKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSTASDIGHEESKKRNVGQRVVVSKSASELELILGVIKNYCKARLGRDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRASEDDKSLDALGENELVAASSNFSHDKFMSLTMLSQTKGKLRYLKGLVQSKQRLQCESPNSSSITRETTAMSNSTEEKAVLVSKTDDETCPICQEKLGNQKMVFQCGHLTCCKCLFAMTEKRLENSKLHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTIDSSDKCEESISVKGSYGTKIEAVTRRILWVKANDHRAKVLVFSSWNDVLDVLEHSFAANNISYIRMKGGRKAHVAISQFRGKQNGAKGCEGSTPKFIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKSLIHRFIVKNTVEDSIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLTRAPLTMPESEENHNTSTNLRHLPPSVAAAIAAEKRLNEQRT 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00027 1680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1347 1430 IPR013083 -
Spst8g00027 1680 ProSiteProfiles Zinc finger RING-type profile. 1367 1415 IPR001841 -
Spst8g00027 1680 SUPERFAMILY RING/U-box 1361 1419 - -
Spst8g00027 1680 Pfam SNF2-related domain 292 795 IPR000330 GO:0005524|GO:0140658
Spst8g00027 1680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 698 IPR027417 -
Spst8g00027 1680 Coils Coil 1078 1098 - -
Spst8g00027 1680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 481 IPR013083 -
Spst8g00027 1680 Gene3D - 345 395 IPR038718 -
Spst8g00027 1680 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Spst8g00027 1680 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1464 1635 IPR001650 -
Spst8g00027 1680 SMART helicmild6 1492 1584 IPR001650 -
Spst8g00027 1680 Pfam Helicase conserved C-terminal domain 1462 1584 IPR001650 -
Spst8g00027 1680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 1635 IPR027417 -
Spst8g00027 1680 SMART PHD_3 414 482 IPR001965 -
Spst8g00027 1680 Pfam Zinc finger, C3HC4 type (RING finger) 1367 1414 IPR018957 GO:0046872
Spst8g00027 1680 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Spst8g00027 1680 SMART ultradead3 285 669 IPR014001 -
Spst8g00027 1680 CDD DEXQc_SHPRH 289 699 - -
Spst8g00027 1680 Gene3D - 482 720 IPR038718 -
Spst8g00027 1680 SMART ring_2 1367 1414 IPR001841 -
Spst8g00027 1680 MobiDBLite consensus disorder prediction 936 963 - -
Spst8g00027 1680 CDD SF2_C_SNF 1458 1595 - -
Spst8g00027 1680 Gene3D - 1436 1668 IPR027417 -
Spst8g00027 1680 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 72 1679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00027 Spst-Chr8 249625 264268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00027 493 793 RAD5 or RAD16-like Gene Family AT5G43530 30.565 1.55e-32 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst8g00027 SNF2_N 8.9e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00027 K15710 - gmx:100776659 2945.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00027 8 249625 264268 Spst8g00027 8 249625 264268 ECH