Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00017 ATGGAGCTTTATGACCATGATTTCTTGGAGGAATCAATGGCTCTAAGAAGAGAACCATGGGATACCAATCCATGCTCACAAGAAAACCAGTTTTCCTCTTATAGTTTTGATTGTTTAGATCAAAACTATCAAGCTCTTCCTCCAAATTCTTTCTCTTTCCAAGAAGCCCCCCAGAGTTACAACAACGACTACACCTTCAATGAAATCTATAGTTACTTGCTTGATGAATTTTCTGCACCCCAAATTGTAGATTCAGCTTATAACACCCTTGATACTTCACATAACACCCCTCCATTTGTGGGTCATGAAGATTATCCATTGTCCATGATGGAAGATGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCATTCTTTGGACCTTCAAACCACATGCAAATTGGAGCCAAGCCATTCTCCTGAAATGCCTGTTTTCAACACAGATTCATGTGTGGAAAGAAAGAATAGAGCGAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGGAGAAGAAGGAAGAGATTAAACGACAGGCTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACTATCGATTATATGAAAGAGCTCTTGGAAAAGATTAACAACTTGAAGCAAGAAATAGAAGTAGATTCCAACATGGCTAGCATTTTCAAGGATGTAAATCCAAACGAAATCGTAGTCAGAAATTCTCCAAAGTTTGATGTGGAGAGGAGAAATGTCAATAATACAAGGGTGGAGATATGCTGTGCAGGGAAGCCAGGCTTGTTACTGTCTACAGTAAACACATTGGAAACATTAGGTCTCGAGATCCAACAATGCGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGCTCAGAGCAGAAGACAATTCTGAGTTCCGAAGATATAAAGCAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 987 0.4032 MELYDHDFLEESMALRREPWDTNPCSQENQFSSYSFDCLDQNYQALPPNSFSFQEAPQSYNNDYTFNEIYSYLLDEFSAPQIVDSAYNTLDTSHNTPPFVGHEDYPLSMMEDEDPGLLGEELHSLDLQTTCKLEPSHSPEMPVFNTDSCVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINNLKQEIEVDSNMASIFKDVNPNEIVVRNSPKFDVERRNVNNTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEQKTILSSEDIKQALFRSAGYGGRCL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00017 328 SMART finulus 167 216 IPR011598 GO:0046983
Spst8g00017 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Spst8g00017 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 54 322 - -
Spst8g00017 328 Coils Coil 200 227 - -
Spst8g00017 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 223 IPR036638 GO:0046983
Spst8g00017 328 Gene3D - 169 243 IPR036638 GO:0046983
Spst8g00017 328 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00017 Spst-Chr8 141914 144240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00017 152 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.574 2.00e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g00017 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00017 - - vra:106764382 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00017 8 141914 144240 Spst8g00017 8 141914 144240 ECH