Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00005 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATTGACAATTCGACAAGTAGGCAAGTCACGTTCTCAAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGCGTTATGATTTTCTCCAGTACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTAATTGAACGATACAACAAATCAAAGGAAGAAAATTGTCAGATACGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAATCAATTAGAAATTAGCCTTCGGGGTGTCCGTATGAAAAAGGATCAACTTTTAATGGATGAAATACACGAACTAAATCGAAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTACAAGAAGGTAAACCTAATTAGTCAAGAAAACATGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGATAGCGAAACAAACAGAAGCTCTGTTCTCACAAATGGTCTAGGCATCGGAGAGGATTTGCAAGCGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGCTCCTTCAGGAACTACAAAATTGGGCAGATTGCAATTGCATTGA 723 0.4163 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIERYNKSKEENCQIRSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIHELNRKGNLIHQENVELYKKVNLISQENMELKKKVYGTKDDSETNRSSVLTNGLGIGEDLQAPVNLQLSQPQQQHYKAPSGTTKLGRLQLH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00005 240 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst8g00005 240 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Spst8g00005 240 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Spst8g00005 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst8g00005 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst8g00005 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst8g00005 240 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Spst8g00005 240 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Spst8g00005 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst8g00005 240 Coils Coil 86 113 - -
Spst8g00005 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst8g00005 240 MobiDBLite consensus disorder prediction 219 240 - -
Spst8g00005 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst8g00005 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst8g00005 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst8g00005 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00005 Spst-Chr8 34074 50313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00005 1 231 MADS-box Gene Family AT2G22630 62.025 1.54e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst8g00005 K-box 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00005 K09264 - gmx:100812413 443.351