Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00001 ATGGCCTCACCAGCAGTGAAGTTGTTCGTTGAAGACGATCAAGTGGTCATGGACAATGGCATAGTGCAAGTGTATTTATCCAACCCTGGTGGATTTGTTACCAGAATTCAATATAATGGCATTGATAATCTGCTTGAAACTCGTAATAACAAAAGAGGAGATAGAGGGTACTGGGACGTTGTTTGGAGCGAAGCTGGAAGTACAGGAACAACAGGGACATTTGAACGGATTGTGGGAACAGGTTTTAATGTTATAACGGAAAAGGAGGAACTTGTTGAGATCTCATTCACAAGTAAGTGGGATCCATCTCTCAAGGGAAAGACAGCCCCTCTTAATATTGATATAAGGTATGTGATGCTTTGTAATTCGTCAGGATTCTACTCCTACGCCATCTTTGAACACCTACAGGAGTGGCCTGCTTTCAACATACCTCAGATAAGGATTGTTTACAAGCTTGGTAAAGACAAGATCTTGTTTCTAAAGATGATGTTGAGAAATGATTTGCGTAGGTTTCATTACATGGTCGTGTCGGATGATAGACAGAGATTTATGCCTCTCCCTGAAGACAGATTACCCGGAAGAGGAGTTGAACTTGTTCCTCCAGAAGCAGTTTTGCTCGTGAATCCTGTGGAGCCAGAGTTTAAGGGAGAGGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTATGGTTCATGGATGGATAAGTTCTCAATCTGAAACCGATCCAGTCACAGGGTTTTGGGTAATCATACCCAATAATGAGTTTCGATCAGGTGGTCCAGTAAAACAGAATCTTACTTCCCATGTCGGCCCAACAAGTCTAGCTATGTTTCTGAGTGCTCATTACGCAGGAGAGGATATAGTTCTGAAACTCCAACCTAACGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTTAACACTTTGTTAGACGGTGATGATCCCCTAGTTCTATGGGAAGACGCTAAAAATCAGACGAACGAGGAGGTTCAAAGTTGGCCCTACGATTTTCCAGCTTCGGAAGATTTTCAGAAGTCTAGTCAACGGGGCAGTGTTTGTGGCACATTACTAGTCCGAGACAGGTAA 1101 0.4269 MASPAVKLFVEDDQVVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLETRNNKRGDRGYWDVVWSEAGSTGTTGTFERIVGTGFNVITEKEELVEISFTSKWDPSLKGKTAPLNIDIRYVMLCNSSGFYSYAIFEHLQEWPAFNIPQIRIVYKLGKDKILFLKMMLRNDLRRFHYMVVSDDRQRFMPLPEDRLPGRGVELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLMVHGWISSQSETDPVTGFWVIIPNNEFRSGGPVKQNLTSHVGPTSLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDPLVLWEDAKNQTNEEVQSWPYDFPASEDFQKSSQRGSVCGTLLVRDR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00001 366 Gene3D - 7 295 IPR014718 GO:0030246
Spst8g00001 366 Pfam Rhamnogalacturonate lyase family 9 218 IPR010325 -
Spst8g00001 366 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 366 - -
Spst8g00001 366 CDD RGL4_N 6 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00001 Spst-Chr8 466 4049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00001 1 366 Polysaccharide Lyase AT1G09890 59.128 1.05e-148 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00001 K18195 - gmx:100815677 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00001 8 466 4049 Spst8g00001 8 466 4049 ECH