Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01540 ATGGGAAGGGCTCCTTGCTGTGAGAAAGTTGGGTTGAAGAAGGGGAGGTGGACGGCAGAGGAAGATGAAATCTTGGGAAAATACATTCAGGTCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCAGGTCTATTGAGGTGTGGGAAGAGTTGCAGACTCAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTGAAGAGGAAACCACTATCGTCAAGTTACACGCTTCTTTTGGTAACAGGTGGTCTTTGATAGCGAGTCACTTACCAGGAAGAACGGACAACGAAATAAAGAACTACTGGAATTCTCACCTCAGCAGGAAAATTTACAGTTTCCCAAGGATGGAGACGCAACCAGGAACCATGGATACACCTAAAGTAGTGTCTATTCCTCCCAAGCGAAAAGGTGGCAGAACAAGCCGTTGGGCAATGAAGAAGAACAAAACCCACACCCAAAATAGCAACAGACCCAAACACACTTTCATTGAACAGAATATTATTGACATCGCAGTTCCGACGCCACCTACTCCGTCGCTGGAGAGCGAGGGTGTGTCCAACGCCGTTACGGATTTGACGGCGGCGGCGGACGCTGACGTGGCAGAAGAGCATGGTGAGGCGAGAAGGGAGGCAGAAGTAAATGAAAAGTGTGAGAAGGAGAAGAGCGTGGAAGAAAGCGGTGATGGGGACATCTTAGGACTGTGTGAATTTGAGGACATTAATGAGGGAAGCGGGGCGTTGTGCATTAGTGACATGTTGGAAAGTTGTTTGGCGGAAACAAGTGGGGTTTGGGACATAAGTGAGGAGAGAGAGAGGAATGATGTGGTAGTGGCGGGTGGTGCTGATGCGTGTCCCAACAAAACGTCGTCGTGCGAGAGCAGCGTCAATGGCGATTCCTGCTCTTCCATGGCCCTAGGCTTGGATAAACACTGGGATTGGGAGAGCGTGGTAGAGTTCAATAACATTGCTGAGTCCCAACTCTTTTGTGATGATTGGGAACACAAAGAGAAACTCTTGACTTGGCTTTGGGAGGACGGTGATTGGGAAAGCGACACCATGAAATTGGGAGAGACAGATCCCCACACGCCAAACGACGTCATTGATTGGTTTCTCTCTTGA 1137 0.4846 MGRAPCCEKVGLKKGRWTAEEDEILGKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEETTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFPRMETQPGTMDTPKVVSIPPKRKGGRTSRWAMKKNKTHTQNSNRPKHTFIEQNIIDIAVPTPPTPSLESEGVSNAVTDLTAAADADVAEEHGEARREAEVNEKCEKEKSVEESGDGDILGLCEFEDINEGSGALCISDMLESCLAETSGVWDISEERERNDVVVAGGADACPNKTSSCESSVNGDSCSSMALGLDKHWDWESVVEFNNIAESQLFCDDWEHKEKLLTWLWEDGDWESDTMKLGETDPHTPNDVIDWFLS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01540 378 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 209 - -
Spst7g01540 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst7g01540 378 CDD SANT 16 61 IPR001005 -
Spst7g01540 378 SMART sant 13 63 IPR001005 -
Spst7g01540 378 SMART sant 66 114 IPR001005 -
Spst7g01540 378 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst7g01540 378 MobiDBLite consensus disorder prediction 123 147 - -
Spst7g01540 378 MobiDBLite consensus disorder prediction 208 228 - -
Spst7g01540 378 FunFam Myb transcription factor 71 116 - -
Spst7g01540 378 FunFam Myb transcription factor 11 67 - -
Spst7g01540 378 Gene3D - 11 67 - -
Spst7g01540 378 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst7g01540 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst7g01540 378 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst7g01540 378 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst7g01540 378 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst7g01540 378 CDD SANT 71 112 IPR001005 -
Spst7g01540 378 Gene3D - 71 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01540 Spst-Chr7 69009357 69012633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01540 1 165 MYB Transcription Factor Family AT5G49330 65.934 1.21e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst7g01540 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01540 K09422 - gmx:100814275 471.47