Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01489 ATGGACATCAAGCGATGGCCGCAAGAGTCCAGGCAGATCGTGCGGTGTTCGCCAACCTGTCGTTTTGAGGGCTACCAAGACACTCTATACGTCCAAGCCCACAAACAGTTCTACGAGAGCTGCATCGTTAGTGGCACAATTGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCGGAACCGCATCATGGTTGTGAGGAAGCCAAATGACAACCAGCAGAACATGGTGACAACACAAGGGAGAGAGGACAAGCAACAAGCCACTCGGAATTGTGCTCCGAAGTGCACAATCAAACCTGATGACAAACTGGTCCCGATAAAGGACAAGATCGGGAGCTACCTTGGAAGGCCATGGAAGGAGTTCTCAAGAACCATTGTGATGGAATCAGAAATAGGTGACTTCATTCACCCTGATGGATGGACAGCTTGGAATGGAGACTTTGCTCTCAAAACATTGTACTATGCTGAGTATGGCAACACAGGACCTGGTGCCACCACCAATATGCGAC 508 0.4961 MDIKRWPQESRQIVRCSPTCRFEGYQDTLYVQAHKQFYESCIVSGTIDFIFGDAAVVFRNRIMVVRKPNDNQQNMVTTQGREDKQQATRNCAPKCTIKPDDKLVPIKDKIGSYLGRPWKEFSRTIVMESEIGDFIHPDGWTAWNGDFALKTLYYAEYGNTGPGATTNMR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01489 169 PANTHER PECTINESTERASE 19 169 - -
Spst7g01489 169 Pfam Pectinesterase 19 169 IPR000070 GO:0030599|GO:0042545
Spst7g01489 169 Gene3D - 17 169 IPR012334 -
Spst7g01489 169 ProSitePatterns Pectinesterase signature 2. 43 52 IPR033131 -
Spst7g01489 169 SUPERFAMILY Pectin lyase-like 20 167 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01489 Spst-Chr7 66467382 66467889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01489 19 169 Carbohydrate Esterase AT1G02810 57.616 3.41e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01489 - - gmx:100784679 266.544