Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01478 ATGAACAACCTCGCACTTACATCCATTCTCACCGTCATTTCTGCACTACTCTTCTTAGCCACTCATTTGACTCACACCCCAACAAGAACCACACAAAAACACCTCCATTACCAAAAACACATACAAGTAGCCCAATCCACGTGCCAAGGAACACTCTACCCCAACCTATGTGTCTCAACCCTTGCCACATTCCCAGATCTCACCTCAAAATCTGTCCCACAAGTGATTTCTTCGGTGGTCAACCATACCATGTACGAGGTCAAATCATCGTCCTACAACTGCAGCGGCCTCAAAAAGAAGCTCAGAAATCTCAACCCACTCGATCGGAGAGCCCTAGACGACTGTCTCAAACTGTTCGAAGACACCAACGTGGAGCTCAAAACCACCATCAACGATCTCTCCAAGACCACCATCGGGTCCAAGCGCCACCATGACTTGCAGACTCTGCTCAGCGGAGCAATGACCAACTTGTACACGTGCCTCGACGGCTTTGCGTACAGCAAAGGGCGCGTGAGAGACAGAATCGAGAAGAAGCTGCTTGAGATATCACATCACATGAGCAACTCCTTGGCCATGCTGAAGAAAGTTCCTCGAGTGAAGACAACAACATCGAAATCTGAGGTGTTCCCCGAATATGGAAAGATGAAAAACGGTTTCCCCTCCTGGGTGTCGCCCAAAGACCGAAAGCTTCTCCAAGCGTCTGTGAATGAAACCAAGTTCGATCTCGTCGTTGCCAAAGATGGCACTGGCAATTTCACCACTATAGGGGAAGCTCTCACTGTGGCTCCCAACTCCAGCACTACCAGGTTTGTGATACACATAAAGGCGGGGGCATATTTCGAGAACGTTGAAGTGATCAGGAAGCAGACGAATCTGATGTTTGTTGGAGACGGCATTGGGAAGACAGTAGTGAAAGCCAGTAGGAACGTTGTGGACGGGTGGACAACTTTTCAATCAGCTACTGTTGCTGTTGTGGGAGAAGGATTCATAGCAAAGGGAATAACTTTTGAAAACTCAGCAGGGCCAGACAAACACCAAGCTGTGGCCCTGAGAAGTGGTGCTGACTTCTCAGCTTTTTTCCAATGCAGTTTTGTTGGCTACCAAGACACTCTTTACGTGCATTCCCTACGCCAATTCTATCGTGAATGTGACATTTATGGCACTGTAGACTTCATTTTTGGCAATGCAGCTGTGGTGTTCCAAAACTGTAACTTATACGCACGCAAGCCAAACGATAATCAAAAGAACTTGTTCACTGCGCAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCTGCAGATTTAATCCCTGTCAAATCCTCCTTCAAGAACTACCTAGGTCGTCCTTGGAAAATGTACTCAAGAACTGTTTTTCTAAAATCTTACATGGAGGATCTGATTGACCCAGCAGGGTGGCTGGAATGGAATGGCACATTTGCATTGGACACACTGTATTATGGAGAGTACATGAATAGGGGTCCAGGTTCAAACACAAGTGGCAGAGTTACATGGGCAGGTTACAGGGTCATTAATAGCTCCACTGAGGCAAGCCAATTCACTGTTGGTCAATTTATTCAAGGCAATGAATGGTTGAACACCACTGGCATTCCATTTTTCTCTAGTTTGAGTTGA 1662 0.4687 MNNLALTSILTVISALLFLATHLTHTPTRTTQKHLHYQKHIQVAQSTCQGTLYPNLCVSTLATFPDLTSKSVPQVISSVVNHTMYEVKSSSYNCSGLKKKLRNLNPLDRRALDDCLKLFEDTNVELKTTINDLSKTTIGSKRHHDLQTLLSGAMTNLYTCLDGFAYSKGRVRDRIEKKLLEISHHMSNSLAMLKKVPRVKTTTSKSEVFPEYGKMKNGFPSWVSPKDRKLLQASVNETKFDLVVAKDGTGNFTTIGEALTVAPNSSTTRFVIHIKAGAYFENVEVIRKQTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGEGFIAKGITFENSAGPDKHQAVALRSGADFSAFFQCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNDNQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKNYLGRPWKMYSRTVFLKSYMEDLIDPAGWLEWNGTFALDTLYYGEYMNRGPGSNTSGRVTWAGYRVINSSTEASQFTVGQFIQGNEWLNTTGIPFFSSLS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01478 553 SUPERFAMILY Pectin lyase-like 239 549 IPR011050 -
Spst7g01478 553 FunFam Pectinesterase 41 198 - -
Spst7g01478 553 NCBIfam pectinesterase inhibitor domain 15 195 IPR006501 GO:0004857
Spst7g01478 553 Gene3D - 235 552 IPR012334 -
Spst7g01478 553 PANTHER PECTINESTERASE 14 542 - -
Spst7g01478 553 Pfam Pectinesterase 241 538 IPR000070 GO:0030599|GO:0042545
Spst7g01478 553 CDD PMEI-like_3 46 198 - -
Spst7g01478 553 SMART PMEI_2 39 192 IPR006501 GO:0004857
Spst7g01478 553 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Spst7g01478 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 196 IPR035513 -
Spst7g01478 553 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Spst7g01478 553 FunFam Pectinesterase 235 552 - -
Spst7g01478 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 196 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01478 Spst-Chr7 65809909 65813899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01478 68 548 Carbohydrate Esterase AT4G02320 56.275 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01478 K01051 - gmx:100802881 982.63