Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01408 ATGGATAGTAACCATGGGCCCCTAGTAGAGACACAAGCGAGGGTGCAGCGTGATGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTCGTCAACTACATCGCCAACCATGGTGAAGGTCACTGGAATTCCGTGGCACGATGTGCAGGTTTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGATGTGCGGCGGGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGGTGGGGCAACAGGTGGTCGAAGATTGCTCAGCAGCTGCCGGGAAGAACGGACAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTCAAGTGCGATGTCAATAGCGAACAGTTCAGAGACACTTTGCGTTATGTGTGGATGCCGCGCTTACTAGAGCGGGTTCAGCCCAAGTCGCAACTTCTGGAGCCTCAGATGAAAGTGGACACAAACCCAAGTGGAGTTCAGGGTTTTCATCAACAAACCGGGTTTCACGGTTCAGATTCAGTGACAGAGTGGGGTAAACCCAACCACTCCACCGGTTCTTACTCGGACTCATCATCCGTGGATCTCCAAGTTCATTCGAATTCAGACCATAACGATTCTTGGGATTCGGGTATCGATCTGTGGGCAAGTTTCAATTCGTTGGAACAGGGGAACTGTGGGAGTGAGTCGTTGGAAAGTTTGTGGAATGACCTCGAAATAAAATACAGTTTCCTTCCGTGA 792 0.4937 MDSNHGPLVETQARVQRDENEMLGLRKGPWTVDEDTILVNYIANHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQQLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSEQFRDTLRYVWMPRLLERVQPKSQLLEPQMKVDTNPSGVQGFHQQTGFHGSDSVTEWGKPNHSTGSYSDSSSVDLQVHSNSDHNDSWDSGIDLWASFNSLEQGNCGSESLESLWNDLEIKYSFLP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01408 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Spst7g01408 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 222 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst7g01408 263 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Spst7g01408 263 Gene3D - 27 79 - -
Spst7g01408 263 CDD SANT 84 123 IPR001005 -
Spst7g01408 263 Gene3D - 84 125 - -
Spst7g01408 263 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Spst7g01408 263 SMART sant 26 76 IPR001005 -
Spst7g01408 263 SMART sant 79 127 IPR001005 -
Spst7g01408 263 FunFam MYB transcription factor 84 147 - -
Spst7g01408 263 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Spst7g01408 263 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Spst7g01408 263 FunFam Myb transcription factor 27 79 - -
Spst7g01408 263 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Spst7g01408 263 MobiDBLite consensus disorder prediction 174 219 - -
Spst7g01408 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Spst7g01408 263 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01408 Spst-Chr7 60845202 60846211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01408 25 205 MYB Transcription Factor Family AT1G48000 61.053 1.14e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst7g01408 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01408 K09422 - gmx:778065 319.701