Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01386 ATGGAAAAGAAAACGACAATGGTCTCTGCTGTTTCTCTAATTCTCGTAGTAGGTGTTGCCCTAGGGGTTGTCGCTTTTGTCTCCACCGGCGATGAAGACCCCAATGGCGACACCACCGGTCACGTGACCACCCACGCAAAAGCTGTGCAAGCCGTGTGCCAAAACAGCGACGACAAGACGTTCTGCAAAGACACTTTCGAATCCGTCAACACCTCAGACCCAACCGCGTACGTTAAAACCGTGGTGAAAAACACAATGGAGAGCGTCATCAAAGCTTTCAACCTAAGCGACACTCTCACCGTCGAAAACAGCAAGGGAAACTCCAGCGTTAAGATGGCCCTTGATGATTGCAAGGACTTGTTGCAATTCGCCATCGACGAATTACAGGCCTCCGAGATTCTAGTCAGAGAGAACAACATTAACAACATCAACGACCGCGTCTCCGACCTGAAAAACTGGATTGGCGCCGTCGTCGCATACCAGCAGTCGTGTCTCGACGGCTTCGATACGGACGCCGAGAAGGAGGTGCAATCGAAGTTGCAAAGCAAAGGTTTGGACCACGTTGGGAAGTTAACGGCGTTAGCGCTTGACGTTGTGTCTAGCTTCGCGGAAATACTCTCAGACTTCAATTTGGATCTCACTACCAAGACTACGTCTCGTCGTCTTCTCGATGTGGAGCAAGATGGGTATCCGTCGTGGATGTCCAAGCCGGACCGGAAGCTCTTAGGGGATGCGAAAAAAGGAGATGCGATTCAACCTAATGTGGTTGTTGCCAAGGATGGTAGTGGCGATTATAAGACTGTTTTGGATGCTGTTAACTCCTACCCTAAGAAACATCAAGGCAGATACATTATCTACGTCAAGGCTGGTACCTATGATGAGTACATAACCGTTGACAAAAAGAAGAAGAATCTTCTAATCTACGGCGATGGCCCCACCAAGACAATTATCACTGGTAATAAAAACGTAAAGGATGGTTTTAAGACAATGAGATCTGCAACCTTCTCGACGGTTGGAGAAGATTTCATTGCAAAGTCTATAGCATTTGAGAACACTGCTGGCGCGGCGAAACACCAAGCAGTGGCGCTGCGCGTGCAAGGTGATCGCTCGGCCTTCTTCGACTGCGCCATGCACGGTTACCAGGACACGTTGTACGTCCACGCGCACCGTCAGTTCTACCGCAACTGCGAAATATCCGGAACGGTGGATTTTATTTTCGGGTACGGCACCGTCCTGATCCAGAACTCGAAGATCGTTGTGCGGAAGCCCGATCCGAATCAGCAGAACATAGTGGTGGCAGACGGTACGGACCAAAAGAACATGCCGACAGGATCGGTGCTGCAGAACTGCGAGATCGTGGCGTCGGCGGATCTAGAACCGGTGAAGAAGTCGTTTAGGACGTACTTGGCGAGGCCGTGGAAGGCATATTCGAGGGCCATCTTCATGGAAAATAGGATCAGCGATATGATTCATGCAGATGGCTTTCTTCCATGGAATGGGGACCTGTACCTTGACACCTGTTTCTTTGCTGAGTATGCGAACACTGGCTTGGGTGCCGATGTAAAAAGTAGGGTTAAGTGGGGTCGCGGGACCCTTAGCAAGGCTGACGCTACCAAATACACCGCTAACCAATGGCTCCAAGCCAACGCCTGGCTCCCCGCCACTGGCGTGCCTTTCAATCTTGGCTTCGTCAAAGCTTGA 1701 0.5068 MEKKTTMVSAVSLILVVGVALGVVAFVSTGDEDPNGDTTGHVTTHAKAVQAVCQNSDDKTFCKDTFESVNTSDPTAYVKTVVKNTMESVIKAFNLSDTLTVENSKGNSSVKMALDDCKDLLQFAIDELQASEILVRENNINNINDRVSDLKNWIGAVVAYQQSCLDGFDTDAEKEVQSKLQSKGLDHVGKLTALALDVVSSFAEILSDFNLDLTTKTTSRRLLDVEQDGYPSWMSKPDRKLLGDAKKGDAIQPNVVVAKDGSGDYKTVLDAVNSYPKKHQGRYIIYVKAGTYDEYITVDKKKKNLLIYGDGPTKTIITGNKNVKDGFKTMRSATFSTVGEDFIAKSIAFENTAGAAKHQAVALRVQGDRSAFFDCAMHGYQDTLYVHAHRQFYRNCEISGTVDFIFGYGTVLIQNSKIVVRKPDPNQQNIVVADGTDQKNMPTGSVLQNCEIVASADLEPVKKSFRTYLARPWKAYSRAIFMENRISDMIHADGFLPWNGDLYLDTCFFAEYANTGLGADVKSRVKWGRGTLSKADATKYTANQWLQANAWLPATGVPFNLGFVKA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01386 566 CDD PMEI-like_3 51 203 - -
Spst7g01386 566 FunFam Pectinesterase 45 203 - -
Spst7g01386 566 Gene3D - 248 563 IPR012334 -
Spst7g01386 566 SMART PMEI_2 44 198 IPR006501 GO:0004857
Spst7g01386 566 SUPERFAMILY Pectin lyase-like 250 561 IPR011050 -
Spst7g01386 566 FunFam Pectinesterase 248 563 - -
Spst7g01386 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Spst7g01386 566 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
Spst7g01386 566 Pfam Plant invertase/pectin methylesterase inhibitor 48 197 IPR006501 GO:0004857
Spst7g01386 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 202 IPR035513 -
Spst7g01386 566 NCBIfam pectinesterase inhibitor domain 42 182 IPR006501 GO:0004857
Spst7g01386 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 201 IPR035513 -
Spst7g01386 566 PANTHER PECTINESTERASE 19 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01386 Spst-Chr7 59992598 59994393 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01386 3 564 Carbohydrate Esterase AT3G05610 40.531 2.53e-148 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01386 K01051 - gmx:100820142 922.924