Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01345 ATGAAGAGGATGGTGAGAGTGAAGAAGGATACGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAAGAGGCCACTGCTATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAGTTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAAAAAAAGAAAGCAGAAGGCACCTGTAGCTGTTCCCTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACACCAAGGGTATCTACACAGTCAACCATGACAGGGAGAAGAACTAAACCTACAAGGAAGGCCCTGGGCCCACAGGGCTCTAGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCATGCTCACCAGATACCTCAAACAAGTCTGCTAAGAGTGCAGGACAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGGACCGCAGAATGGTGCTGAAACCCAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTACTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTCAAGTCTAATGTGCAGGCATCTAGTACTAAACCAGAACCCGTGAAAGTAACTGACAGTGATACTAAAGTGCTGAAAACCAAAATTAAGGAAAATAAACGCAAGGCAAAAGTTGAAGATGAAAAGACTTGCACTGATCATGTCTCTCTAGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCACAAAAAAGGAACTTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTAATGCCAGCAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCATCTGAAAACCAGGAAGGAGATGCACCTTTACCCCAGATTCCTTCAAGTTATGTAAGAATTAAGGATGGAAGCATACCAGTCTCGTTTATCCAAAAATTGTTAATGAAGAAACTAGACCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTGGTTGAATTGTGGCTTGATACGGCATCTACAGGACACAGAATTCCCGCAACCATTGGATCCTCAGGGAAAGATTTTGTCATGATCCTAACCTATGGTCGGAAGGTCCTACACCCACACCCTTGA 1290 0.4171 MKRMVRVKKDTIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITDEELESCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFKKRKQKAPVAVPSVLLPARRKERSLSSLVVSTPRVSTQSTMTGRRTKPTRKALGPQGSSFSVEKLIKKEEELLEDRQDSSCSPDTSNKSAKSAGQSLSPCKNSQSICNRGPQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQASSTKPEPVKVTDSDTKVLKTKIKENKRKAKVEDEKTCTDHVSLDTAKPNKLRRVRTKKELVFGESRISPQAVLDANASNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLDLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVLHPHP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01345 429 Pfam Zinc finger, C3HC4 type (RING finger) 18 58 - -
Spst7g01345 429 MobiDBLite consensus disorder prediction 111 146 - -
Spst7g01345 429 MobiDBLite consensus disorder prediction 225 241 - -
Spst7g01345 429 SUPERFAMILY RING/U-box 12 81 - -
Spst7g01345 429 ProSiteProfiles Zinc finger RING-type profile. 18 59 IPR001841 -
Spst7g01345 429 SMART ring_2 18 58 IPR001841 -
Spst7g01345 429 MobiDBLite consensus disorder prediction 111 142 - -
Spst7g01345 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 423 IPR044807 GO:0004842
Spst7g01345 429 MobiDBLite consensus disorder prediction 159 200 - -
Spst7g01345 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 100 IPR013083 -
Spst7g01345 429 MobiDBLite consensus disorder prediction 165 200 - -
Spst7g01345 429 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Spst7g01345 429 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01345 Spst-Chr7 51038763 51044212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01345 4 346 C3H Transcription Factor Family AT2G30580 48.986 6.95e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01345 K16277 - gmx:100778462 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03133 1 39897183 39902576 Spst7g01345 7 51038763 51044212 PCT