Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01328 ATGGAAGCTGGCCTCATGAAGGAGAAGATGGTGTTCGAGGAAACTGAACTCAGGCTGGGACTTGGACTGCCCGGGAATGGAGCCGCGGCAACTGAAGCAGAAGGAGTGAGGAAGAGAGGGTTCTCTGAAACTGAGACTGAAACAACTACCGTTGATTTGATGCTTAACCTCTCCCCCAAGGAAGCTACTTCTGCTGATGGAGCAGATCCACGGGATATGCCAAAGACTTCGCCTAAGGAGAAGACCCTTTTGCTTCCCGATCCCGCCAAACCTCCTGCTAAGGCGCAAGTGGTGGGATGGCCACCAGTGAGGTCTTTCCGGAAGAACATGTTTGCAGCCCAAAAGAGCAGTGGAGAGGAAAGCGAGAAGAACAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACGAGAGTTACCCAGAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCTTTCACCATTGGAAACTGTGAATCCCAAGGCTTTAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAATAGCTCCGACTATGTCTCAACCTATGAAGACAGGGATGGCGACTGGATGCTTGTCGGTGATGTTCCATGGCAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 741 0.4899 MEAGLMKEKMVFEETELRLGLGLPGNGAAATEAEGVRKRGFSETETETTTVDLMLNLSPKEATSADGADPRDMPKTSPKEKTLLLPDPAKPPAKAQVVGWPPVRSFRKNMFAAQKSSGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYESYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVSTYEDRDGDWMLVGDVPWQMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01328 246 SUPERFAMILY CAD & PB1 domains 123 227 - -
Spst7g01328 246 Pfam AUX/IAA family 14 237 IPR033389 -
Spst7g01328 246 Gene3D - 122 240 - -
Spst7g01328 246 FunFam Auxin-responsive protein 123 238 - -
Spst7g01328 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 233 IPR003311 GO:0005634|GO:0006355
Spst7g01328 246 ProSiteProfiles PB1 domain profile. 128 228 IPR000270 GO:0005515
Spst7g01328 246 MobiDBLite consensus disorder prediction 21 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01328 Spst-Chr7 48506828 48509707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01328 116 231 B3 DNA Binding Superfamily AT3G61830 32.759 2.40e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst7g01328 AUX_IAA 2.1e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01328 K14484 - gmx:100780214 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03144 1 39986404 39987358 Spst7g01328 7 48506828 48509707 PCT