Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01320 ATGGCCAATCACCCTTCCGAACCTCCCACCGACGACTTCCTCGAGCAAATCCTCGGTCTCACCCCCTTCGTCTCCGCTGGCCCCGCCGATGCCTCTCCGATAATGCTCCAGCTCAACTCTGGCGATGCCGCCACCCACCTCGCTGCCGGAGCTGCCTTCCACGCGCCGCCCTACCAACTGGGCCTCAGCTTGGACCAAGGTAAGGGAGGCTTCCTCTCGCCCGAAGATGCTTCTGGAAGCAGCAACCGCTTCCGCAACGACGTCATTGATACCAGGCCTAAGAACGTTTTTCATGGACAACCCATGCCAACTACTATTCCTACAGCCCCAAATCCACCGGCAGTGCGACCTAGAGTGCGGGCTAGAAGAGGACAAGCTACAGATCCACACAGTATAGCTGAAAGGTTGCGAAGAGAGAAAATAGCAGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTGAACAAGACAGATAGAGCTGTCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGTGCTGGTGCTGTGGCACCATTAGTAACTGACGTCCCATTATCATCAGTTGAGGAAGAAGGAAATGATGGAAGAAATCAGCCAGCGTGGGAGAAGTGGTCAAATGATGGCACAGAGAGACAGGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAAGCACTCTGCATCATGCCTATCTCACTGGCATCAGCAATATACCAGTCACAACCATCAGACAGCTCTAGTATAATTAAACCTGAAACTAATCCTCCTTCATAG 843 0.5089 MANHPSEPPTDDFLEQILGLTPFVSAGPADASPIMLQLNSGDAATHLAAGAAFHAPPYQLGLSLDQGKGGFLSPEDASGSSNRFRNDVIDTRPKNVFHGQPMPTTIPTAPNPPAVRPRVRARRGQATDPHSIAERLRREKIAERIRALQELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDVPLSSVEEEGNDGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDSSSIIKPETNPPS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01320 280 Gene3D - 120 182 IPR036638 GO:0046983
Spst7g01320 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 184 IPR036638 GO:0046983
Spst7g01320 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Spst7g01320 280 MobiDBLite consensus disorder prediction 204 223 - -
Spst7g01320 280 MobiDBLite consensus disorder prediction 93 129 - -
Spst7g01320 280 FunFam Basic helix-loop-helix transcription factor 120 182 - -
Spst7g01320 280 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 259 - -
Spst7g01320 280 Pfam Helix-loop-helix DNA-binding domain 130 174 IPR011598 GO:0046983
Spst7g01320 280 SMART finulus 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01320 Spst-Chr7 46997408 47001009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01320 53 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.872 1.37e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g01320 HLH 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01320 - - gmx:100793177 464.536