Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01315 ATGGGCAAAGGAGAAGCAGTGGTGGTTCGCGGTGGTTGGTTGGGGCTCACAATAGCCACTACTGGGGACGTGTTGCCTGCTGGTGATGGCTGGAGATGGCTATTGTGCACGGATCTAGGGTTAAGGATGAGTGGAAGAGCAGAAATCAATGGGATCGAGAAAGGAATGAGAGTGGTGTTGGATGGTGGTTCGAAGGTGCGCGGTGGTTGGCGCGGTGGTGAAGGACCAGTGAGAACCCCTGCCACCTGTTCACTAGCAAGGTTCTGCGTATACTTATTAGTCGTGTCCCGAGCTAGGATTTTGCATTTCTTGGCTCACCAAGGTGCAAAAAGTAGCCCTCACGAAACCAAGGCAATGTTCCCTTCAATTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGGTGGACTCAATCACGTAGTCACAACAACCATTTCTCCACAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCGGATGCTGAAGTGATTGCTTTATCACCGAAGACTCTTCTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGATTTCAGAGAGACCAGAACCTTCAGCTTCATAGGAGAGGCCATAACCTCCCATGGAAGCTGAAGCAAAGAAACAACAAAGAGGTGAAGAAGAAAGCCTACGTTTGCCCAGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCCCTGGGGGACCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAATTAGCCACCAACACCACAAACCCACTAGTCCAATCCCTCTTCCTTTTCCCAAACCAGCAACACAACAACTTCATGAATCCCTGGGACCCAAACCCTAACCCTAACAACCTTCCCACTCTACACAACACCATCAAACATGAATCTCACAACTTCCACACCCCCATTATCGATAACAACAACAGCATCTCTTCTCCTTCCTTCCTTCTCCATCATCCCCCCAAGACCATGATAACCTCGCCCTACCGTGACCTCCACGTTCGCCCCACCAACACTGCCACGTCAGCACACCTCTCCGCCACTGCGCTGCTCCAGAAGGCCGCAACCATCGGAGCCGCCGCCATCACGGGCCCCTCTCACGTGACTACGCTCAGCATGGCCGAGTTGGGAACCGTGTCGACTCAGCTCAACTCGGTGCCACCCGAACGCTACATCAACATGAGGGACCTCAAGAATAACGACGGTCTCACCAGGGACTTTCTAGGCCTCACCAATGGCGGCGCGGTTGACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACGGGAGGGAGCGTAGATAATAAGCGTATAGAGGTTTATCTCGCAAATGATCGTGAGGTTATGACATGTCGGCAAGGGTCAGCTGTCACAACCATGCAAGCTTTAAAACGACTGAAATACCCTTTCTACGACCCCATGGATGAGAGAGAGATGCTTTAG 1686 0.4994 MGKGEAVVVRGGWLGLTIATTGDVLPAGDGWRWLLCTDLGLRMSGRAEINGIEKGMRVVLDGGSKVRGGWRGGEGPVRTPATCSLARFCVYLLVVSRARILHFLAHQGAKSSPHETKAMFPSIMSNSNSLSEEATVSCGTRIGGLNHVVTTTISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNTTNPLVQSLFLFPNQQHNNFMNPWDPNPNPNNLPTLHNTIKHESHNFHTPIIDNNNSISSPSFLLHHPPKTMITSPYRDLHVRPTNTATSAHLSATALLQKAATIGAAAITGPSHVTTLSMAELGTVSTQLNSVPPERYINMRDLKNNDGLTRDFLGLTNGGAVDVSIDVKDMLTFTGGSVDNKRIEVYLANDREVMTCRQGSAVTTMQALKRLKYPFYDPMDEREML 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01315 561 SUPERFAMILY beta-beta-alpha zinc fingers 190 287 IPR036236 -
Spst7g01315 561 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Spst7g01315 561 SMART c2h2final6 232 262 IPR013087 -
Spst7g01315 561 SMART c2h2final6 267 287 IPR013087 -
Spst7g01315 561 SMART c2h2final6 191 213 IPR013087 -
Spst7g01315 561 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 146 501 IPR031140 -
Spst7g01315 561 Gene3D Classic Zinc Finger 225 315 - -
Spst7g01315 561 FunFam protein indeterminate-domain 5, chloroplastic-like 245 324 - -
Spst7g01315 561 FunFam protein indeterminate-domain 12-like 170 238 - -
Spst7g01315 561 Gene3D Classic Zinc Finger 187 214 - -
Spst7g01315 561 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 213 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01315 Spst-Chr7 45761007 45771921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01315 135 512 IDZ Gene Family AT4G02670 52.672 1.69e-122 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g01315 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01315 K25870 - gmx:100780056 640.958