Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01275 ATGAATCATATGAATCCAGTGAAAGAAGAATACTTGGAATCATCACCATCATCATCATCATCATTTCAGTTAGGTAGTGAATATCCACCAAAACCAATTGAGGGACTTCATGACACAGGACCCCCAGCGTTCCTCAACAAAACTTTTGATGTTGTGGATGATCCAGTTACGGACCACGTTGTTTCTTGGAGCAGAGACGGCGCAAGCTTTGTGGTTTGGGATCCCCATACCTTCTCTGCAAGTCTCCTTCCGAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTACGGTTTTAGGAAAATTGATCCAGATAAATGGCAGTTTGCAAATGAAGGATTCATCAGAGGGCACAAGCAAATGTTAAGAAGCATAAGGAGAAGGAAAGCACCTTCCCAAATAACAGAAGGTCGCCACTGCGTTGAAGTTGGACGTTTTGAATTAGACAAAGAGGTTGATCGTTTGAGTCATGACAAGCTAGTGCTAATGATGGAGCTTATGAATCTGAGACAACAGCAGCAGAAAGCCAGAATATACATTCAGGAGATGGAGCAAAGGTTGCAAGGGACTGAAATCAAGCAGAAGCATATGATGGCATTCTTAGCTAGAGCCATAAAAAATCCTGCCTTCATACACCAACTCCGACAGAAAGAGAAGACAAAGGAGGTTGAAGAATCCTTGACTAAAAAGAGAAGGCAAATTGAGCAAGGAGCTAGAGGTATTGGAGAATCAAGCAGTGGGGGTGAAGGAAGGAGCAGTGTTAAAGTTGAGGCCTTAGAATATGAGGATTGTGACTTTGGAGTGTCAGAGTTAGAAATGTTAGCAAGGGAAATGCAGGGGTTTGGAAAGGGTAGGATAGAGCAGGAGGTAGAATCTGAGGCACTAGAATCACAAGAGAGGCTGGATAGATTACTTGATGAAGAGTTTTGGGAAGAACTATTGATCAGTGAGAAGTTTGGGGGTGGATTAGACATTCTAACTACTGAAGATAAAGATGAAGATGTTGTCAATGTGTTGGCCAATGAACATGGTTTCTTGGATTCAAGTCATTAA 1068 0.4204 MNHMNPVKEEYLESSPSSSSSFQLGSEYPPKPIEGLHDTGPPAFLNKTFDVVDDPVTDHVVSWSRDGASFVVWDPHTFSASLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWQFANEGFIRGHKQMLRSIRRRKAPSQITEGRHCVEVGRFELDKEVDRLSHDKLVLMMELMNLRQQQQKARIYIQEMEQRLQGTEIKQKHMMAFLARAIKNPAFIHQLRQKEKTKEVEESLTKKRRQIEQGARGIGESSSGGEGRSSVKVEALEYEDCDFGVSELEMLAREMQGFGKGRIEQEVESEALESQERLDRLLDEEFWEELLISEKFGGGLDILTTEDKDEDVVNVLANEHGFLDSSH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01275 355 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g01275 355 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g01275 355 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g01275 355 MobiDBLite consensus disorder prediction 226 242 - -
Spst7g01275 355 Gene3D - 36 134 IPR036388 -
Spst7g01275 355 FunFam Heat shock transcription factor 1 37 134 - -
Spst7g01275 355 Coils Coil 171 191 - -
Spst7g01275 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 246 IPR027725 -
Spst7g01275 355 Coils Coil 292 312 - -
Spst7g01275 355 MobiDBLite consensus disorder prediction 11 25 - -
Spst7g01275 355 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g01275 355 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g01275 355 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst7g01275 355 MobiDBLite consensus disorder prediction 1 25 - -
Spst7g01275 355 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Spst7g01275 355 MobiDBLite consensus disorder prediction 226 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01275 Spst-Chr7 43046237 43047639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01275 30 354 HSF AT3G22830 47.238 2.51e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst7g01275 HSF_DNA-bind 3.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01275 K09419 - gmx:100811945 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03162 1 40151813 40153594 Spst7g01275 7 43046237 43047639 PCT