Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01248 ATGGGGTTCGAAACACTGCAGGCCCCGATGGACATCAAGCGATGGTCGCAAGAGTCCAGGCAGATCGTGCGGTGTTCGCCAACCGTCGTTTTGAGGGCTACCAAGACACTCTATACGTCCAAGCCCACAAACAGCTTCTACAGGAGCTGCATCGTTAGTGGCACAATTGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCGGAACCGCATCATGGTTGTGAGGAAGCCAAATGACAACCAGCAGAACATGAAGTGCACAATCAAACCTGATGACAAACTGGTCCCAGTAAAGGACAAGATCAGGAGCTACCTTGGAAGGCCATGGAAGGAGTTCTCAAGAACCATTGTGATGGAATCAGAAATAGGTGACTTCATTCACCCTGATGGATGGACAGCTTGGAATGGAGACTTTGCTCTCAAAACATTGTACTATGCTGAGTATGGCAACACAGGACCTGGTGCCACCACCAATATGCGATGTAAATTTACGTCGCATATTGGTATATGCGACGTAAATTTACGTCGCGTATTGGTATATGCGACGTAA 549 0.4809 MGFETLQAPMDIKRWSQESRQIVRCSPTVVLRATKTLYTSKPTNSFYRSCIVSGTIDFIFGDAAVVFRNRIMVVRKPNDNQQNMKCTIKPDDKLVPVKDKIRSYLGRPWKEFSRTIVMESEIGDFIHPDGWTAWNGDFALKTLYYAEYGNTGPGATTNMRCKFTSHIGICDVNLRRVLVYAT 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01248 182 Gene3D - 24 172 IPR012334 -
Spst7g01248 182 PANTHER PECTINESTERASE 34 164 - -
Spst7g01248 182 Pfam Pectinesterase 35 84 IPR000070 GO:0030599|GO:0042545
Spst7g01248 182 Pfam Pectinesterase 85 166 IPR000070 GO:0030599|GO:0042545
Spst7g01248 182 SUPERFAMILY Pectin lyase-like 34 164 IPR011050 -
Spst7g01248 182 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01248 Spst-Chr7 40635308 40635911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01248 36 160 Carbohydrate Esterase AT1G02810 52.448 6.35e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01248 - - gmx:100784679 211.46