Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01215 ATGGCTGCGCCACTAGGCAATAGGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAGTGATTCTGGTTTGGGGTGATGGATACTACAATGGGGCAATTAAGACTAGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCATCTCTCCAAAGAAGCCAGCAACTTAGAGAACTCTATGAATCATTGTCTTCCGGAGAGACAAATCCACCAACTCGCCGGCCATGCGCCGCCTTGTCGCCGGAGGACCTAACAGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCCGGAAAGGCTTATGCTAGGAGGCAGCATGTTTGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGACAGTGGTGTGCATTCCTTTATTAGACGGCGTGGTTGAGTTTGGCACGACGGATAAGGTTCAAGAAGACCTTAACTTCATCCACCACGTCAAGACATTCTTCACAGACCACCACCACCCTCTCCCGCCCAAGCCCGCCTTGTCCGAGCACTCAACCTCCAACCCCATATCCTCCTCCGACCACATCCCAGCCGTCATGTACACCGTCGCAGACCCACCCGCCACCAATCCCACCCAAAACGACATGGACGAAGATGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGACGGCCTCCGAGGACGAAACCAGAGGCCGCGTCGCCCATCCGACGCCGGACATGGAGGGCGTCACGGCTGCGGAGCCCAGTGAGCTGATGCAGCTGGAGATGCCGGAGGACATCCGGGTGGGGTCTCCGAACGACGGGTCGAACAACTTGGACTCGGACTTCCATTTGCTGGCGGTGAGTCAAGGATTGAACGCGGCGGGGCAGGCTGAGTCGACCCGGAGATGGGCCCCGAGTCAAGAGCCACTTCAAGTTCAACTACCAGCTTCAGTTCAATTCAGCTACAATTTGGTTAGCACAACTAGTTTGACTGAAATCGCCCCTGATCTATTAGAAGAGTTGACCCAAGAAGACACACACTACTCTCAAACGGTATCCAACATCCTCCAAAACCAGTCCAGCCGGTGGTCCACCTCGCCCACCTCCGTCGGCTACATCACATACTCCACGCATTCAGCTTTCTCAAAGTGGACCACCCGCGCCAGCCACCTCTTCCACCCGGCGGTCGACGGCCCCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACGGTCCCCTACCTCCACGCCAAGAACCCTACCGAGAATTCTCCGCCAACCGCCGTCGACCCCAAGCTCCGCGGCAAGGGAACGCCGCAGGACGAGCTGAGCGCCAACCACGTGCTCGCCGAGCGCCGCCGCCGCGAGAAGCTGAACGAGCGGTTCATAATTCTGCGGTCACTGGTCCCCTTCGTCACGAAAATGGACAAGGCATCCATTCTCGGCGACACCATCGAATATGTGAAGCAGCTGCGGCGGAAGATCCAGGAGCTGGAGGCCCATAACCGCCACACTGAGGCGGAACAGCGTTCCAAGCTCCCTGAGGTAACGGTTCAAAGGACGAGTAGCAATTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGTTGAGGATCGTGGAAGGGGTGGCGGCGAAGGCGACGGCGGTGGAGGCGGAGGCGGCAACGTCAGTGCAAGTTTCAATCATTGAGAGCGATGCACTGTTGGAGATAGAGTGCCTCCACAGAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGTTGAGGATAGAGGTTATTGGGGTGCAGTCGTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATCCGAACGGGAAGAAGGTGAGCATCGTGGAAGTGAAGAGGGCACTTAACCAAATCATTCCCCATGCGGACTGA 2022 0.5613 MAAPLGNRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSSGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIHHVKTFFTDHHHPLPPKPALSEHSTSNPISSSDHIPAVMYTVADPPATNPTQNDMDEDEEEEEEEEEEEEEEEEEEAETASEDETRGRVAHPTPDMEGVTAAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHLLAVSQGLNAAGQAESTRRWAPSQEPLQVQLPASVQFSYNLVSTTSLTEIAPDLLEELTQEDTHYSQTVSNILQNQSSRWSTSPTSVGYITYSTHSAFSKWTTRASHLFHPAVDGPSQWLLKYILFTVPYLHAKNPTENSPPTAVDPKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEAHNRHTEAEQRSKLPEVTVQRTSSNSSKEQQRSGVTVMEKRKLRIVEGVAAKATAVEAEAATSVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFVAELRAKVKEHPNGKKVSIVEVKRALNQIIPHAD 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01215 673 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Spst7g01215 673 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 186 IPR025610 -
Spst7g01215 673 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 539 IPR036638 GO:0046983
Spst7g01215 673 Pfam Helix-loop-helix DNA-binding domain 473 520 IPR011598 GO:0046983
Spst7g01215 673 MobiDBLite consensus disorder prediction 527 541 - -
Spst7g01215 673 MobiDBLite consensus disorder prediction 193 212 - -
Spst7g01215 673 MobiDBLite consensus disorder prediction 542 560 - -
Spst7g01215 673 Coils Coil 231 263 - -
Spst7g01215 673 MobiDBLite consensus disorder prediction 221 277 - -
Spst7g01215 673 Gene3D - 471 543 IPR036638 GO:0046983
Spst7g01215 673 MobiDBLite consensus disorder prediction 449 468 - -
Spst7g01215 673 PANTHER TRANSCRIPTION FACTOR TT8 7 670 - -
Spst7g01215 673 MobiDBLite consensus disorder prediction 527 562 - -
Spst7g01215 673 Coils Coil 516 536 - -
Spst7g01215 673 MobiDBLite consensus disorder prediction 232 259 - -
Spst7g01215 673 SMART finulus 476 525 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01215 Spst-Chr7 39602270 39611663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01215 370 671 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 41.118 1.31e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g01215 bHLH-MYC_N 1.2e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01215 - - gmx:100786815 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01215 7 39602270 39611663 Spst7g01215 7 39602270 39611663 ECH