Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01153 ATGGCGGAGGTGAAGGAAGAGAGTAAATCCAGTAGCGAGGAGAGTGTGAAGCTCTTCGTGGGTCAAGTGCCGAAACACATGACGGAGGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCGTTGGTTGACGAGGTCAACATCATCAGGGACAAAGTTTCTCGTGCCTCCCGAGGTTGCTGCTTTGTGATTTGTCCCTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCCTGTCACAACAAGAAAACGCTTCCTGGGGCTTCCAGTCCGTTGCAAGTGAAGTATGCAGATGGTGAATTGGAAAGATTGGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTCTCAAAGCATGGGACAATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCGTTGCTGCTCTTGAGGCAATCAATGGAAAGCATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAGTGGGCAGATACTGAAAAGGAAAGACAAGCTCGAAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAACGTACCACATGCTGATCCTCAACAACCCTCACTATATGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATACGGTTATCAGGCTCCTGGGGGTTTTGGGCTCATGCCGTACCGTTTTCCACCAATGCAGAATCAACCAGGTTTTCATAATATGAACATGAACCAAGTAAATGCAGTGAGGCCCGATCATGGTCACAGTTTGAACCCTAGAAATTATCCTGCGCCTCCTGCAAGTTACATTGGCTCTTATCCTGCCATGCCAGGTATGCAGCATCCAATGGTATATCCCAGAGGAATTGTAAGTCCGAGGCCAGTGAGTGGTTCTCTTGGTTCCGTTTCACCTGGAGGCGGGAATAGCAACTATTCATCACCAGGTGCCACTAAAAGTTCCAATGGTCAGATTGAAGGACCACCGGGTGCCAATTTATTTATTTATCACATACCTCAAGAATATGGAGACCAAGAGCTTGCAAATGCATTTCAACAGTTTGGTAGAGTTTTGAGTGCCAAAATTTTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTACGATACCCCAGAAGCTGCTCAAGCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAACAGAGTAGTGGTACAGTAGTTGGTGGGGCCAGGTATTCTGGTTAA 1317 0.448 MAEVKEESKSSSEESVKLFVGQVPKHMTEDEVLAMFKEFALVDEVNIIRDKVSRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSKHGTIKDLQILRGSQQTSKGCAFLKYETKEQAVAALEAINGKHTMEGSSVPLVVKWADTEKERQARRAQKAQSQVSNVPHADPQQPSLYGALPMGYVPPYNGYGYQAPGGFGLMPYRFPPMQNQPGFHNMNMNQVNAVRPDHGHSLNPRNYPAPPASYIGSYPAMPGMQHPMVYPRGIVSPRPVSGSLGSVSPGGGNSNYSSPGATKSSNGQIEGPPGANLFIYHIPQEYGDQELANAFQQFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQAAISTMNGCQLGGKKLKVQLKRDNKQSSGTVVGGARYSG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01153 438 MobiDBLite consensus disorder prediction 309 339 - -
Spst7g01153 438 CDD RRM1_2_CELF1-6_like 105 180 - -
Spst7g01153 438 PANTHER RNA BINDING PROTEIN 15 424 - -
Spst7g01153 438 SUPERFAMILY RNA-binding domain, RBD 104 424 IPR035979 GO:0003676
Spst7g01153 438 FunFam RNA-binding protein BRN1 isoform X1 101 193 - -
Spst7g01153 438 CDD RRM1_2_CELF1-6_like 18 93 - -
Spst7g01153 438 CDD RRM3_CELF1-6 346 418 - -
Spst7g01153 438 Gene3D - 318 421 IPR012677 -
Spst7g01153 438 Gene3D - 102 193 IPR012677 -
Spst7g01153 438 MobiDBLite consensus disorder prediction 310 339 - -
Spst7g01153 438 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Spst7g01153 438 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Spst7g01153 438 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Spst7g01153 438 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Spst7g01153 438 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Spst7g01153 438 SMART rrm1_1 105 180 IPR000504 GO:0003723
Spst7g01153 438 SMART rrm1_1 17 93 IPR000504 GO:0003723
Spst7g01153 438 SMART rrm1_1 345 418 IPR000504 GO:0003723
Spst7g01153 438 FunFam RNA-binding protein BRN1 312 421 - -
Spst7g01153 438 FunFam RNA-binding protein BRN1 2 100 - -
Spst7g01153 438 Gene3D - 2 101 IPR012677 -
Spst7g01153 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 416 IPR000504 GO:0003723
Spst7g01153 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Spst7g01153 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
Spst7g01153 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Spst7g01153 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 422 IPR000504 GO:0003723
Spst7g01153 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01153 Spst-Chr7 35521174 35525589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01153 345 427 Eukaryotic Initiation Factors Gene Family AT4G34110 36.471 3.91e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01153 K13207 - gmx:100796156 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01153 7 35521174 35525589 Spst7g01153 7 35521174 35525589 ECH
Spst1g02595 1 34418932 34423862 Spst7g01153 7 35521174 35525589 PCT