Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01145 ATGATCATGGAGAGGAAGGGATTTGAGTTCAAGTTTGGGTATAGTATGAGATCCAGGTCACAGTCACACAGTGAGGTCATTGCCCAGGATAGTTTGTTGGGGCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTTCTTATGAGGATTGAGGCCTCTGAGGATTCCTGGCCTGCCCGGGAACACGTCGTTGCCTGCGCCGGAGTTTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCCCCTCAAGTATCCGGCAAGTTGACATTCCCAATCTCCTTGAAGCAGCCTGGTCCTAGGGACTCTCTTGTTCAGTGCTATATTAAAAGAAATCACAGTAATAAAACATATTATCTGTTTCTTGGTTTAAACCAAGCCTCAACTGAGGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGAGCAACTCACACTGACTACATCATTTCCCTTAACTGTGATGATGTATCAAGAGGGAGTAATACTTATATTGGGAAGTTGAGATCGAACTTTTTGGGCACCAAATTCACTGTGTATGATGCTCACCCTCCAATTTATGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTTAGTCTCAAGCAAGTTTCTCCTAGGATTCCTGCTGGCAATTATCCCATTGCTCATGTCTCGTATGATCTGAATGTTTTGGGCTCTAGAGGCCCTAGAATAATGCACTGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATCCCTTTCTTCAGATCAAAATCAACCCGCATGGACAATCTCCCATCTTTACCTTTGACTTGTCAAAATGAGGGGATGCTGGTACTGCAAAACAAGTCCCCAAGGTGGCATGAACAACTTCAATGCTGGTGTCTGAACTTCAACGGGCGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCAAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTCGGAAAAGTTGGAAAGGATGTATTCACCATGGATTATCAGTATCCAATCTCGGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1188 0.4487 MIMERKGFEFKFGYSMRSRSQSHSEVIAQDSLLGLDGLKQSCWANMPPELLRDVLMRIEASEDSWPAREHVVACAGVCRSWREIMKEIVKSPQVSGKLTFPISLKQPGPRDSLVQCYIKRNHSNKTYYLFLGLNQASTEDGKFLLSARKCRRATHTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRIPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDNLPSLPLTCQNEGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01145 395 ProSitePatterns Tub family signature 2. 380 395 IPR018066 -
Spst7g01145 395 Pfam Tub family 104 390 IPR000007 -
Spst7g01145 395 Gene3D Tubby Protein; Chain A 101 395 IPR025659 -
Spst7g01145 395 SUPERFAMILY F-box domain 37 86 IPR036047 GO:0005515
Spst7g01145 395 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Spst7g01145 395 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Spst7g01145 395 PRINTS Tubby superfamily signature 325 341 IPR000007 -
Spst7g01145 395 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Spst7g01145 395 PRINTS Tubby superfamily signature 307 324 IPR000007 -
Spst7g01145 395 PRINTS Tubby superfamily signature 352 371 IPR000007 -
Spst7g01145 395 PRINTS Tubby superfamily signature 373 395 IPR000007 -
Spst7g01145 395 FunFam Tubby-like F-box protein 100 395 - -
Spst7g01145 395 CDD F-box_AtTLP-like 43 87 - -
Spst7g01145 395 Pfam F-box domain 43 89 IPR001810 GO:0005515
Spst7g01145 395 SUPERFAMILY Tubby C-terminal domain-like 92 395 IPR025659 -
Spst7g01145 395 PANTHER TUBBY-RELATED 33 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01145 Spst-Chr7 35454915 35457827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01145 3 395 TUB Transcription Factor Family AT2G47900 75.000 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst7g01145 Tub 5.3e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01145 K19600 - gmx:100809257 765.377