Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01132 ATGAGTGTCGCTGCCAAAATCCCCTCTCCGTCTCTCCGCTTTGCAACCACCAAACAGCACAACTCCTCCGATCTTCCAGAACCTTCTACGCCACTCTACCAGCAACCAGATTCTTCACTTCAGGCACTCATAAACTTAACCGTTTCGATGGACTTGTACGGTCGGGGCCCCGCCAGGAATGGATCCAACCCGGTGAACCAACCCGAATGGCGCTCACCGGGCATCGACACTACTCTCGAAGGTCTTAATCACTTTTTCTTCTCGCTTGGTTTTTGTGTTTGTTTAGAATCCATGTGGCATTTAACGCTGGGTTGCGGCGAATCTTACCCTGAGCGGCCCGGCGTGCCCAATTGTGTGTATTACATGCGAACCGGTGTTTGTGGATATGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTAACCCTTTCCATCACTTTGAGATTCTGCATTAGGTTAGAGTTTCATGCAAGTGTCTTGTTGTTGTTGGTTCTTGTAGTAGCCATTGTTGCTGCCGCGGTAAGAGCTACAGGGGATTACCCAGAAAGGGTGGGGGAACCTCCATGTCAGTATTATTTAAAGACTGGAACCTGTAAATTTGGTGCATCATGTAAATTCCACCATCCAAGAAATGGAGGTGGATATTTAAGTCAAGCTCCGCTAAATACTTATGGATATCCGTTACGACCGGGTGAGAGAGAGTGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCTGTTGGCACACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTTCTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACAAACTTGAGAGTGGCCAGGCCTCCTGTAATGTCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCTGGGGTTGTTCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGCTCTATCTCCTGGTGCTCAACCTGGTGTTGGGGCCACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGTCCTCTACTACCGGCCCTTCTGGAAACATCCTGAAGGATCAATTATTTCCTGAAAGACCTGGTGAACCCGAATGCCAATATTATCTGAGAACAGGGGACTGTAAATATGGATTAGCTTGTCGATATCATCATCCTCGGGACCATATTGTGGCACGGCCACTTCTTAGTCCAATTGGACTTCCTTTGCGTCCGGATCAAGATGGACTGCAATTGATCTGGACTTCCACTGAAAAGGCCAGTGTAGTGATGTTCATGATGCCAAATTTTGTGGGGTTACAACCTTGTGCTTTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGATCTTTGAGCTACAGTCCATCTGTATCTTCTTTCACCGATGTGCCAGTTACTCCATACCCAGTAGGATCTTTGCTGTCTCAGCTGGCTCCTTCAACAACATCTTCGGAGTTTCGGCCTGAACTGATGTCAGGATCCAAAAAGGAATCCCTTTCAGCCAGAATATCTTCTTCTGATACTCCTGTCGGTCTAATTTTCTCACAAGGTGGTGGCTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCTAAGCAGTAGCAGAAGCACCAGACAAAGCAGTGAGATACGTTGA 1764 0.4728 MSVAAKIPSPSLRFATTKQHNSSDLPEPSTPLYQQPDSSLQALINLTVSMDLYGRGPARNGSNPVNQPEWRSPGIDTTLEGLNHFFFSLGFCVCLESMWHLTLGCGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVTLSITLRFCIRLEFHASVLLLLVLVVAIVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPRNGGGYLSQAPLNTYGYPLRPGERECSYYLKTGQCKFGITCKFHHPQPVGTPLPASAPQFYQQVQSPSVPLPEQYGGASTNLRVARPPVMSGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPALSPGAQPGVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGNILKDQLFPERPGEPECQYYLRTGDCKYGLACRYHHPRDHIVARPLLSPIGLPLRPDQDGLQLIWTSTEKASVVMFMMPNFVGLQPCAFYLQNGHCKFGSTCKFDHPLGSLSYSPSVSSFTDVPVTPYPVGSLLSQLAPSTTSSEFRPELMSGSKKESLSARISSSDTPVGLIFSQGGGSVSLSDVQLSSQSSAPLSSSRSTRQSSEIR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01132 587 MobiDBLite consensus disorder prediction 562 587 - -
Spst7g01132 587 SUPERFAMILY CCCH zinc finger 394 417 IPR036855 GO:0046872
Spst7g01132 587 ProSiteProfiles Zinc finger C3H1-type profile. 389 417 IPR000571 GO:0046872
Spst7g01132 587 SMART c3hfinal6 186 213 IPR000571 GO:0046872
Spst7g01132 587 SMART c3hfinal6 389 416 IPR000571 GO:0046872
Spst7g01132 587 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Spst7g01132 587 SMART c3hfinal6 461 486 IPR000571 GO:0046872
Spst7g01132 587 SMART c3hfinal6 112 139 IPR000571 GO:0046872
Spst7g01132 587 SUPERFAMILY CCCH zinc finger 116 141 IPR036855 GO:0046872
Spst7g01132 587 Gene3D - 107 158 - -
Spst7g01132 587 PANTHER PROTEIN PHOSPHATASE RELATED 461 511 - -
Spst7g01132 587 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872
Spst7g01132 587 MobiDBLite consensus disorder prediction 522 541 - -
Spst7g01132 587 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 463 485 IPR000571 GO:0046872
Spst7g01132 587 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 213 IPR000571 GO:0046872
Spst7g01132 587 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 391 416 IPR000571 GO:0046872
Spst7g01132 587 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 259 IPR000571 GO:0046872
Spst7g01132 587 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 139 IPR000571 GO:0046872
Spst7g01132 587 ProSiteProfiles Zinc finger C3H1-type profile. 112 140 IPR000571 GO:0046872
Spst7g01132 587 SUPERFAMILY CCCH zinc finger 189 214 IPR036855 GO:0046872
Spst7g01132 587 ProSiteProfiles Zinc finger C3H1-type profile. 459 487 IPR000571 GO:0046872
Spst7g01132 587 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Spst7g01132 587 SUPERFAMILY CCCH zinc finger 235 259 IPR036855 GO:0046872
Spst7g01132 587 Gene3D - 388 497 - -
Spst7g01132 587 Gene3D - 185 264 - -
Spst7g01132 587 SUPERFAMILY CCCH zinc finger 458 489 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01132 Spst-Chr7 34898966 34912233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01132 50 546 C2H2 Transcription Factor Family AT5G18550 43.570 2.00e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst7g01132 zf-CCCH 6.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01132 - - vun:114192085 862.448