Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01131 ATGGACTTGTACGGTCGGGCCCCTGCCAGGAATGGATCCAACCCGGTGAACCAACCCGAATGGCGCTCACCGGGCATAGACTCTGCTCTCGAAGAATCCATGTGGCATTTAACGCTGGGTGGCGGCGAATCTTACCCTGAGCGGCCCGGCGTGCCCAATTGTGTGTATTATATGCGAACCGGTGTTTGTGGATATGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTAACCCTTTCCATCACTTTGAGATTCTGCATTAGGTTAGAGTTTCATGCAAGTGTCTTGTTGCTGTTGGTTGCTGCCGCGGTGAGAGCTACAGGGGAGTACCCAGAACGGGTGGGGGAACCTCCATGTCAGTATTATTTAAAGACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGTCAAGCTTCACTAAATACTTATGGATACCCACTACGGCCGGGTGAGAAAGAGTGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCTGCTGGCACACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCGACTGTTCCTCTGCCTGAACAGTATGGCGGAGCTTCCACAAACTTGAGAGTGGCCAGGCCTCCTGTAATGTCCGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGGTGTCGGGGCCACTTCTTTATATGGAGTGACCCAATTGTCATCAACAACATCAGCTTTTGCTAGACCATATACTCCTCTGTCCTCTACTACAGGCCCTTCAGGAAATATCCCGAAGGATCAATTATTTCCTGAAAGACCTGGTGAATCTGAATGTCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATACCATCATCCTAGGGACCATATTGTGGCACAGCCACTTCTTAGCCCAATTGGACTTCCTTTACGTCCGCGTGGCTTCAGTTGCACTAGGATGAACATGGACAGCAATGGATCAGGAGTAAGAGACAATATTCAACTTCTGCTTTGCACAATTGTAGAGTTGGCCCTTGACACTTCCACTGAAAAGGCCAATGTAGTTATGCCCATGATGCCAAAATTTGTGGGGGTACAACCTTGTGCTTTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGATCTTTGAGCTTCAGTCCGTCGGTATCTTCTTTCATTGATGTGCCAGTTACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGCTGGCTCCTTCAACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCCTTTCAGCCAGAATACCTTCTTCTGGTAGTTCTGTCGGTCTAATTTTCTCACAAGGTGGGTCTGTCTCGCTTTCTGATGTGCCACTCTCAAGTCAGAGTTCTGCCCCTCTAAGCAGTAGCAGAAGCACCAGACAAAGCATCCTCAATCTTTTGATGGCAATTGTTCAAAGTTTCACTGTCGGTGTTGAGAATTCATCATCCAATCCTGTTTAG 1686 0.4733 MDLYGRAPARNGSNPVNQPEWRSPGIDSALEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVTLSITLRFCIRLEFHASVLLLLVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQASLNTYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTPLPASAPQFYQQVQSPTVPLPEQYGGASTNLRVARPPVMSGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVLSPGAQPGVGATSLYGVTQLSSTTSAFARPYTPLSSTTGPSGNIPKDQLFPERPGESECQYYLRTGDCKFGLACRYHHPRDHIVAQPLLSPIGLPLRPRGFSCTRMNMDSNGSGVRDNIQLLLCTIVELALDTSTEKANVVMPMMPKFVGVQPCAFYLQNGHCKFGSTCKFDHPLGSLSFSPSVSSFIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESLSARIPSSGSSVGLIFSQGGSVSLSDVPLSSQSSAPLSSSRSTRQSILNLLMAIVQSFTVGVENSSSNPV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01131 561 Gene3D - 376 447 - -
Spst7g01131 561 Gene3D - 303 355 - -
Spst7g01131 561 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Spst7g01131 561 PANTHER PROTEIN PHOSPHATASE RELATED 410 476 - -
Spst7g01131 561 ProSiteProfiles Zinc finger C3H1-type profile. 116 144 IPR000571 GO:0046872
Spst7g01131 561 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Spst7g01131 561 SMART c3hfinal6 116 143 IPR000571 GO:0046872
Spst7g01131 561 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Spst7g01131 561 SMART c3hfinal6 414 441 IPR000571 GO:0046872
Spst7g01131 561 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Spst7g01131 561 SUPERFAMILY CCCH zinc finger 164 190 IPR036855 GO:0046872
Spst7g01131 561 SUPERFAMILY CCCH zinc finger 119 144 IPR036855 GO:0046872
Spst7g01131 561 ProSiteProfiles Zinc finger C3H1-type profile. 414 442 IPR000571 GO:0046872
Spst7g01131 561 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Spst7g01131 561 SUPERFAMILY CCCH zinc finger 414 444 IPR036855 GO:0046872
Spst7g01131 561 SUPERFAMILY CCCH zinc finger 323 347 IPR036855 GO:0046872
Spst7g01131 561 Gene3D - 115 196 - -
Spst7g01131 561 Gene3D - 44 91 - -
Spst7g01131 561 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Spst7g01131 561 MobiDBLite consensus disorder prediction 1 23 - -
Spst7g01131 561 MobiDBLite consensus disorder prediction 477 500 - -
Spst7g01131 561 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Spst7g01131 561 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 346 IPR000571 GO:0046872
Spst7g01131 561 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 143 IPR000571 GO:0046872
Spst7g01131 561 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 189 IPR000571 GO:0046872
Spst7g01131 561 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 440 IPR000571 GO:0046872
Spst7g01131 561 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01131 Spst-Chr7 34883031 34886778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01131 1 514 C2H2 Transcription Factor Family AT5G18550 41.869 1.65e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst7g01131 zf-CCCH 2.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01131 - - vun:114192085 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01131 7 34883031 34886778 Spst7g01131 7 34883031 34886778 ECH