Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01128 ATGGCAACAAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGACCAAGCAACGAGGTGAAGAAACGGGTTTATGTGTGCCCTGAGCCGTCATGCGTCCACCATAGCCCTGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAACATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGACTGGAAGGCCCACCAGAAAACCTGTGGCACCAGAGAATACAAATGTGATTGTGGGACCATATTTTCCAGAAGAGACAGTTTTATCACACACAGAGCCTTTTGTGACGCATTAACTGAAGAAAACAACCGAGTAAACCATTCATTAACGAGTGGCACTCGCATGACACCGAGCTTGCAAAGGGAATTGCCAGACCTCATGGCCACAATGCCTCTACTCACGAGTCCCAACAACACTGTACCCGAGCTCAACGACAACTACGACCCTAGTAAGAGCCCACTCAAAACCCTATCCCAAGAACATCTTGTCCCAATGCCATTCAAGTCCATGAGCATGAGGGGTGGCATGTTCTCTACCACTTCAGGTACACTCTTTGGTGGTCCAAAAGATATGTCACTTCCCTCATCTTCCACCCTTCAACTCAGCTCCAACAACTCTCCTGCTTTCAATTACTTCCAAGACAGAAAAAACGCTTCTGCCTCGGCTCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGTCACTGCAAGCAATAATAGCATTAACTCTCCCACCATGATGCAGAAAAACTTTGTTAGTGGCATGGCTGGTCCTGACCCCCACCATAGTCCTTCTTCCTTTGACCCCTTCCCTCATCCACATCCTGATGATCAATCTCACATGGCTGGGATTAGTGGTGCTGGAGCCTTCACCAACCAATTTCTTCACAAGGGGCAACAAGAAGTCTCACTAATACTTGATTCCAACACTAATGATATGGGAATTTTCTGTGCAATGTTCATGGGAAGTGACCACAACCAAGGTTTGATGAAGAACGTGGAACAAGAGGTTGGTGCTAGTAGTCCAAGTTTAATTCATAGAATAGATGTATCAGAACGAAATCCAATGGGGGCTTCAAGGTTTGGAGGTGGTAACATGACAGCCGTCCATGATTTCTTGGGCGTTGAGGGTGCAACTTCAAGGGCAGCGAGTTTGCATGAACCTCAGAAACAACAACAGCAAAGATTGGAGTTGGAGGCATTAACCCACCAGAGAATGGATGAAAACGGTACACATGTTAGGATCCCAATAAATTCAATGCTAACATTGGGGCATAGGGGATGCAAAGAATAA 1410 0.4589 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSNEVKKRVYVCPEPSCVHHSPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNHSLTSGTRMTPSLQRELPDLMATMPLLTSPNNTVPELNDNYDPSKSPLKTLSQEHLVPMPFKSMSMRGGMFSTTSGTLFGGPKDMSLPSSSTLQLSSNNSPAFNYFQDRKNASASAHMSATALLQKAAQMGVTASNNSINSPTMMQKNFVSGMAGPDPHHSPSSFDPFPHPHPDDQSHMAGISGAGAFTNQFLHKGQQEVSLILDSNTNDMGIFCAMFMGSDHNQGLMKNVEQEVGASSPSLIHRIDVSERNPMGASRFGGGNMTAVHDFLGVEGATSRAASLHEPQKQQQQRLELEALTHQRMDENGTHVRIPINSMLTLGHRGCKE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01128 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Spst7g01128 469 Gene3D Classic Zinc Finger 60 140 - -
Spst7g01128 469 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Spst7g01128 469 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Spst7g01128 469 Gene3D Classic Zinc Finger 6 48 - -
Spst7g01128 469 FunFam Zinc finger protein MAGPIE 2 29 - -
Spst7g01128 469 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Spst7g01128 469 MobiDBLite consensus disorder prediction 294 323 - -
Spst7g01128 469 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Spst7g01128 469 SMART c2h2final6 47 77 IPR013087 -
Spst7g01128 469 SMART c2h2final6 6 28 IPR013087 -
Spst7g01128 469 SMART c2h2final6 82 102 IPR013087 -
Spst7g01128 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 428 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01128 Spst-Chr7 34834623 34839864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01128 1 280 IDZ Gene Family AT3G50700 51.792 1.01e-97 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g01128 zf-C2H2 0.0047 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01128 - - gmx:100797943 617.846