Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst7g01127 | ATGGGTGACAACATCAACATAGGCGAAGTCTTAGAAAGAGAAGGCTTTAAGTACAACTTCACAGCTTCAACTGCAACTGCAAGTGACCCCTCGCCACAAGATGGGGTTATTAAGGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGAGGATTATGAAGCAAATACTTCCCCCCAACGCCAAGATCTCAAAGGAAGCTAAAGAAACCATGCAGGAATGTGTTTCCGAGTTCATAAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAAACCGTGAATGGTGACGATATTTGCTGGGCCTTAGCTACCCTAGGGTTTGATGACTACTCTGAGCCTCTTAAAAGGTACTTGCTTAAGTATAGGGAGTTGGATGGGGAGAGAGCAAACCAAAATAAGGGTAGCAACAGTTATGAAAACAACATTGCAAACATATAA | 453 | 0.4415 | MGDNINIGEVLEREGFKYNFTASTATASDPSPQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLLKYRELDGERANQNKGSNSYENNIANI | 150 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst7g01127 | 150 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 74 | 90 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Spst7g01127 | 150 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 43 | 107 | IPR003958 | - | |
Spst7g01127 | 150 | SUPERFAMILY | Histone-fold | 40 | 145 | IPR009072 | GO:0046982 | |
Spst7g01127 | 150 | PRINTS | CCAAT-binding transcription factor subunit A signature | 109 | 127 | - | - | |
Spst7g01127 | 150 | PRINTS | CCAAT-binding transcription factor subunit A signature | 71 | 89 | - | - | |
Spst7g01127 | 150 | PRINTS | CCAAT-binding transcription factor subunit A signature | 90 | 108 | - | - | |
Spst7g01127 | 150 | Gene3D | Histone, subunit A | 33 | 148 | IPR009072 | GO:0046982 | |
Spst7g01127 | 150 | FunFam | Nuclear transcription factor Y subunit B-3 | 32 | 149 | - | - | |
Spst7g01127 | 150 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 26 | 139 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst7g01127 | Spst-Chr7 | 34737651 | 34738103 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst7g01127 | 36 | 137 | CCAAT-HAP3 Transcription Factor Family | AT2G47810 | 81.373 | 6.82e-61 | 183 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Spst7g01127 | CBFD_NFYB_HMF | 8.7e-28 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst7g01127 | K08065 | - | gmx:100796514 | 265.003 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst7g01127 | 7 | 34737651 | 34738103 | Spst7g01127 | 7 | 34737651 | 34738103 | ECH |