LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst7g01120	ATGGTCGAAACCAGACGTAGTAGCTCCTCCTCTTCCAAGCGCTCTCTCTCTTCGCCCTCTCCCCCCAACAACACCAAAAGATCCAAGGTTCAATCTTTACTCCCTTTCACCGCTACCCACCTCTCGCTTTTTATGCCAATTCCCCTTTTCCTCATCTGGGTATTTCATTTTAATCTCAATTCGAGACGGGTGCCTCGTGTTGATCAATTCTCTTTGGTGACGCAGGTGTCCGAGGATTCCTCATCCACCACCGTGCCCTCGGTCGCTCCGGTCAACGAATCTGGACCCGGGAATGAATCCGCCGAACCGGAGTTGCGGCCCTCTGATCTGCCCGATACGGCGTCGTTGAAGGCCGTCGATGGGTGTGATGTGATGTCACCTGATAAATCTCTGTCCACACCCGTTGAAGGGGAGGTTTTGGTGGCCCCCCAGTGTCTAGGTGAAACAGCGGAGAAATCGAAGGGGGCTGGTGCAGCGGCGGCGGCCGCGGCGGTGTCAACGGGTGGTCGGTCGAAGAAGCGCCCTACAAGATTGACCCCCAAGGTTGCGTGGGGAAAGCTCCTTTCTCAGTGTTCTCAGAGCAATGCATGGCAACTTCGATCCTTGAAGTTTTCTTCTGTAAAGGGTAGTGATTTTGGACAATCAATGCAGAATGAGCAACGCGGAGGCTCGTCTGTTGCATTACTTGAAATCACAGGGGGTAAAGGTTCTATTCAAGTTAATGGCAAAACTCATCGAAAGAATGCCCGTTTAATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCACAAATAATAATATTAGTCCTGCTGGTATACCTTCATCCGTGAGTATTTTAGAAGCCCAGAGTGCTCCTATAAATGGAACACAAGTTGAAGCTAGATCTGGTGACCCTTCTGCTGTTGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGATTTATCTCTCCTTTCGTCTCCTGCAAAAACAGGAAAGAATGTTGAACAGAACACTGACATTTCATCACTACCGTCTGGCAATGGGGATGACATGCCAGATAGTGAAATGAAGGATGACACCAATAAAGATGTACCATCTGGAGTTTTCTCTGCTGAGAAAACTGTTCTTGCATCCTCTAACACTGTTAATGAAAATCCTAGCCTTGACACAACAGAAGTTGACACCAATGTGGATGCTGATGTTGGGAAGGTGACTGCTGCTGCATATGAGTTGAGGCCCCTACTGCGCATGCTTGCTGGCTCATGTCCTGAACTTGATTTAAGTTGTGGCATCACCAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCATCAACCAGGCGGCAAGCATTCAAGGACAGTTTACAACAGAGAATTTTCAAACCTGAGAATATTGATGTCTCTTTTGAAACTTTCCCGTATTATCTAAGTGAGACAACCAAGAATGTTTTGATCACTTCTACATATATTCATATGAAATGCAATGGATTTGGAAGATATGCTTCAGACCTCCCATCAGTATCTCCACGAATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAACATTTTGGTGCCAGGCTACTGATTGTGGATTCTCTTTCACTTCCTGGTGGAGCACCATCAAAAGAAGTTGATTCTGCTAAAGAAAGTTCCAGACCTGAAAGACCATCTGTGTTTGCTAAGAGAAGTTCCCAGACTGCCACATTACATCATAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTATAGGTGGATCTACGTTAAGTTCTCAGGCAATGCTGAAGCAAGAGGTTTCCACTGCATCATCAAAAGGCACTACTCTTAAAGAGGGTGATAGGGTAAAATTTGTTGGGAATTTTCCTTCTGCCGTCTCAGCACTACCAAATTATCCTTCAAGGGGACCAAGCTATGGCTCCCGGGGTAAAGTTCTGCTAGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGTGAAGAGGATCGAGGGTTCTTTTGTTCAGCAACATATAATTCATTGAGGATTTATACTGCAGCAAATCATTTACTACGGGTAGATGGCTCTGGAGGGGATGATACAGACAAAGTTGCAATAAATGATATTTTTGAGGTTACCTCTAATCAGAGTAAAAGTGGTCCCCTAGTGTTGTTCATTAAAGATATAGAGAAAGCAATGGTTGGAAACTATGAAGTTTTGAAAATTAAAATTGAAAGTTTGCCACCAAATGTTGTGGTAATTGGCTCTCATACTATGCTTGACAATCGAAAGGAGAAGACCCAACCTGGTGGACTTCTATTTACAAAGTTTGGGAGTAATCAGACTGCACTGCTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGTCGCCTTTTCCCAAACAAAGTGACAATACAGCTACCTCAGGATGAGGCTTTACTTTCTGATTGGAAGCAGCAATTAGAACGTGATATTGAAACTATGAAAGCTCAGTCCAATACTGTCTGCGTTCGCACAGTTCTCCACAGGATTGGATTGGATTGCCCTGACATTGAGACTATTTGCATCAAAGACCAAACCCTAACAACTGAAAGTGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTACCAAAGATTCTAAGCTTGTTATATCTGCAGAAAGCATTAATTATGGGCTCAACATTCTACAGGGCATTCAAAATGAGAATAAAAACTTGAAAAAATCACTCAAGGATGTGGTTACTGAGAATGAGTTTGAGAAAAAGCTGCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCGTTAGAAAATGTGAAGGACACCTTAAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTATTTTGCAAAGGACAGCTGACAAAGCCTTGCAAGGGAATATTGCTTTTTGGTCCCCCCGGCACTGGAAAAACAATGCTTGCGAAGGCTGTAGCTACTGAGGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTGAAAGCAGTTTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTGGACGAGGTTGATAGTATGCTAGGGAGACGTGAAAACCCCAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTCAATTGGGATGGTTTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACGAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTTAGAGTCATTTTAGCCAAAGAGGATTTGGCACCTGATGTTGATTTTGAAGCAATGGCTAATATGACCGACGGATACTCTGGGAGTGACTTAAAGGTTGTATTTCTATACATTTTTCACTTTCATTCTTGGTTTCTGGAGAAGGAGAAGAGCTTAGCGTTAACGGAGAACAAACCTTTACCTGGATTGTGTAGCAGCTCCGACATCCGTTCTTTGAAGATGGATGATTTTAGATATGCACATGAGCAGGTGTGTGCGAGCGTGTCATCAGAGTCAACAAATATGAATGAACTACTCCAATGGAATGACCTCTATGGAGAAGGAGGATCAAGAAAAATGAGATCTCTGAGCTATTTCATGTAA	3894	0.4301	MVETRRSSSSSSKRSLSSPSPPNNTKRSKVQSLLPFTATHLSLFMPIPLFLIWVFHFNLNSRRVPRVDQFSLVTQVSEDSSSTTVPSVAPVNESGPGNESAEPELRPSDLPDTASLKAVDGCDVMSPDKSLSTPVEGEVLVAPQCLGETAEKSKGAGAAAAAAAVSTGGRSKKRPTRLTPKVAWGKLLSQCSQSNAWQLRSLKFSSVKGSDFGQSMQNEQRGGSSVALLEITGGKGSIQVNGKTHRKNARLILSGGDEVVFGSSGKHAYIFQQLTNNNISPAGIPSSVSILEAQSAPINGTQVEARSGDPSAVAGASILASLSNLHKDLSLLSSPAKTGKNVEQNTDISSLPSGNGDDMPDSEMKDDTNKDVPSGVFSAEKTVLASSNTVNENPSLDTTEVDTNVDADVGKVTAAAYELRPLLRMLAGSCPELDLSCGITKILEERRELRELLKDVDTPTILASTRRQAFKDSLQQRIFKPENIDVSFETFPYYLSETTKNVLITSTYIHMKCNGFGRYASDLPSVSPRILLSGPAGSEIYQETLCKALAKHFGARLLIVDSLSLPGGAPSKEVDSAKESSRPERPSVFAKRSSQTATLHHKKPASSVDAEIIGGSTLSSQAMLKQEVSTASSKGTTLKEGDRVKFVGNFPSAVSALPNYPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEEDRGFFCSATYNSLRIYTAANHLLRVDGSGGDDTDKVAINDIFEVTSNQSKSGPLVLFIKDIEKAMVGNYEVLKIKIESLPPNVVVIGSHTMLDNRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLGRLFPNKVTIQLPQDEALLSDWKQQLERDIETMKAQSNTVCVRTVLHRIGLDCPDIETICIKDQTLTTESVEKIIGWAISYHFMHSSEASTKDSKLVISAESINYGLNILQGIQNENKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILAKEDLAPDVDFEAMANMTDGYSGSDLKVVFLYIFHFHSWFLEKEKSLALTENKPLPGLCSSSDIRSLKMDDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM	1297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst7g01120	1297	SMART	AAA_5	1033	1170	IPR003593	GO:0016887
	Spst7g01120	1297	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	995	1171	-	-
	Spst7g01120	1297	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	995	1215	IPR027417	-
	Spst7g01120	1297	CDD	RecA-like_ATAD1	1000	1166	-	-
	Spst7g01120	1297	MobiDBLite	consensus disorder prediction	569	607	-	-
	Spst7g01120	1297	MobiDBLite	consensus disorder prediction	75	94	-	-
	Spst7g01120	1297	Gene3D	-	1169	1259	-	-
	Spst7g01120	1297	MobiDBLite	consensus disorder prediction	587	602	-	-
	Spst7g01120	1297	MobiDBLite	consensus disorder prediction	336	356	-	-
	Spst7g01120	1297	Pfam	ATPase family associated with various cellular activities (AAA)	1037	1166	IPR003959	GO:0005524\|GO:0016887
	Spst7g01120	1297	Gene3D	-	995	1271	IPR027417	-
	Spst7g01120	1297	MobiDBLite	consensus disorder prediction	1	28	-	-
	Spst7g01120	1297	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	468	1296	-	-
	Spst7g01120	1297	Coils	Coil	957	977	-	-
	Spst7g01120	1297	ProSitePatterns	AAA-protein family signature.	1140	1159	IPR003960	GO:0005524\|GO:0016887
	Spst7g01120	1297	MobiDBLite	consensus disorder prediction	336	368	-	-
	Spst7g01120	1297	MobiDBLite	consensus disorder prediction	75	113	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst7g01120	Spst-Chr7	34520628	34533218	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst7g01120	996	1211	Calmodulin-binding Proteins	AT3G56690	40.000	1.06e-37	152

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst7g01120	-		-	gmx:100801477	2071.97