Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01064 ATGATGGGTGAGAAGTTTTGTGTGAACGAAGAGGAGAAGGGTGTGTTGGAATCTGTGTTGGGTGCAGAGGCTGTTGCGTTTTTCATTTCAGCACTATCCAATAATGTCTTTTCCAGCGTTGTTGCTCCGTCTGCCGGCGCTGAGTCGGTCCTCCGCCAGCGGTTGTCCCAGCTTGTTGAGGGTTCCAAGTGGAACTATGCTGTTTTTTGGCAGGTTGCTGGGTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGATGGGCATTGCAGTGACCCAAAAGGGAAGAGGAGTGGAGTTGGGAAGCAGGATAAGCAGGAGGTGAGAAAGATGGTGCTGCAGAAGCTTGATGCCTGCTTTGGTGGGTCTGTGTCGAAAGAGGCTAATTATGCGAGATTGGATAGGGTTTCTGATTTGCTCTTGTTTTACTTATCCTCGATGTGTTATATATTTGGTTTTGAATCGCCATGTGGCCCTGGGAGTTCATTCAAATCTGGTAAATTGATTTGGACTTCAGATGCTGCTGGTTGTTTAAATCAATTAGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTGAAGTCTGGGGTGGTGGAGCTTGGTTCGAATGAAGTGGTGTCTGAAGAGCAGGGTTTTGTGGAGATGGTCAGGACAACATTTGGGGAATCCAGTCCCGGACAGGCAAAGGTGTTTCCCAAGATTTTTGGGCACGAGTTAAGCCTGGGGGGGGATACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCCTTTGAAGTTCAAGCATTGGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGGACTTTAGGGGACAGTAATGAAGGGAAAATGTTCCCTCAACTCAATCAAATGATGGGTGGGAATTTTAATGCTCAAGCACGGGTTCCTTCTCTAGATCTCGGTAATGAAGACTCGTCCTCAATTCATGCAGATGAGCGGAAACCCAGAAAAAGAGGTAGAAAACCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCTGAGAGACAAAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCCGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATCACCGATCTCCAGATGAAGATCAAAGTGTTGGAAGCTGAGAAGAACATGATTAACAATAAGGACCAGATGTTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACATTGTTGTGACAGTGGGATGCCCCTTAGATACTCACCCTGTTTCTGATGTTGTTAAAACTTTTAGGGAGCATCAAATTGTGGCTCAAGACTCCAATGTTTCAACTACAGATGATAAAATCATTCATACATTCACCATAAGAACTGAGGGAGGGGAGACTGCTGCCTTACAGTTGAAAGAAAAGCTTGAAGCGTCCATATCCAAAAGTTGA 1518 0.4473 MMGEKFCVNEEEKGVLESVLGAEAVAFFISALSNNVFSSVVAPSAGAESVLRQRLSQLVEGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGKRSGVGKQDKQEVRKMVLQKLDACFGGSVSKEANYARLDRVSDLLLFYLSSMCYIFGFESPCGPGSSFKSGKLIWTSDAAGCLNQLESRSFLGKVAGLQTVVFVPLKSGVVELGSNEVVSEEQGFVEMVRTTFGESSPGQAKVFPKIFGHELSLGGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGVNHAYGNSSNGTLGDSNEGKMFPQLNQMMGGNFNAQARVPSLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQMLSLPDMDFQEREDDIVVTVGCPLDTHPVSDVVKTFREHQIVAQDSNVSTTDDKIIHTFTIRTEGGETAALQLKEKLEASISKS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01064 505 ProSiteProfiles ACT domain profile. 438 505 IPR002912 -
Spst7g01064 505 MobiDBLite consensus disorder prediction 323 364 - -
Spst7g01064 505 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Spst7g01064 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 423 IPR036638 GO:0046983
Spst7g01064 505 Coils Coil 399 419 - -
Spst7g01064 505 SMART finulus 359 408 IPR011598 GO:0046983
Spst7g01064 505 MobiDBLite consensus disorder prediction 331 364 - -
Spst7g01064 505 MobiDBLite consensus disorder prediction 288 309 - -
Spst7g01064 505 PANTHER MYC 45 501 IPR045084 GO:0003700|GO:0006355
Spst7g01064 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Spst7g01064 505 FunFam Transcription factor bHLH13 346 420 - -
Spst7g01064 505 Gene3D - 346 419 IPR036638 GO:0046983
Spst7g01064 505 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Spst7g01064 505 CDD ACT_UUR-ACR-like 438 505 - -
Spst7g01064 505 CDD bHLH_AtAIB_like 350 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01064 Spst-Chr7 21734689 21736206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01064 2 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.937 2.00e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g01064 bHLH-MYC_N 2.2e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01064 - - gmx:100782107 905.59