Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01050 ATGGAATTCAGCTGCCAAGATGATTCCAAAAGCTCCAGCGATGAAGTTGATCGATCATCGGAACAGAATGATGAGATGGGCACTGGCAGATCCTATGAGTGTGTCTTCTGCAAGCGAGGCTTCACCACTGCACAGGCTTTAGGTGGACACATGAACATACACCGAAAAGATAGGGCCAACAAGGCTAAATCCAATTTTCCTCCTTCCACTTCAACCAAGGTTGATGAAAGTAACGGCTATTCAGATCTCGGGTTATACTCACCATCAAATCCAAGCTATCTTGCAAGAGGAACTTACTATTCCACTCTTCCTGATCGAGAGGTAGACACTAATTACAACTACTACCATCAATTATATTTTCCCTCACACGCTTGTGGTGCCAAATCACCTTCACATGTACAATATAGTGAGGTTTTGTGTGTAGAGAACCAAAGGGATCCTCAGTTTGTCTTTGGACAAGATTGGAGGCAAAGGGGTTTGAGTTTGTACGCTAATCCATTATGTGTTCATGAAAATAAAGACAAGATGGAAAACAACAGTGAAGATGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCATCCATAG 591 0.4264 MEFSCQDDSKSSSDEVDRSSEQNDEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKAKSNFPPSTSTKVDESNGYSDLGLYSPSNPSYLARGTYYSTLPDREVDTNYNYYHQLYFPSHACGAKSPSHVQYSEVLCVENQRDPQFVFGQDWRQRGLSLYANPLCVHENKDKMENNSEDDDLDLELRLGHHHP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01050 196 Gene3D Classic Zinc Finger 7 82 - -
Spst7g01050 196 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Spst7g01050 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Spst7g01050 196 MobiDBLite consensus disorder prediction 1 27 - -
Spst7g01050 196 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Spst7g01050 196 PANTHER OS07G0101800 PROTEIN 9 194 - -
Spst7g01050 196 MobiDBLite consensus disorder prediction 63 81 - -
Spst7g01050 196 MobiDBLite consensus disorder prediction 7 24 - -
Spst7g01050 196 MobiDBLite consensus disorder prediction 57 81 - -
Spst7g01050 196 Pfam C2H2-type zinc finger 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01050 Spst-Chr7 20667881 20668471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01050 32 63 C2H2 Transcription Factor Family AT5G43540 87.500 3.24e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g01050 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01050 - - ccaj:109812060 313.538