Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01022 ATGTCTACCTCTGCAGCTTCTCTTGCACTCCCCACTCTTACTCTCCGAACCCGCCACCCTCTCTCTTCGCCCCAATGCTTCTCCTCCTCCCTCTCCCTCATCCCTAACGCCAAACCCATCTCCATTTCCACCGTTTTCCTCAAACCCACCTTCTCCCTCTCCTCGCGCTTCCTTCCCCGCGTCGCTGTCTCTTCCGAGTTCGACCAGGAAGAGGACACCTTCAGCGACGGAGACGGCGACGGCCGCGGCAGGTTCTCCCCCGACCTTAAGCTCTTTGTCGGCAACCTTCCGTTCAGCGTCGACAGTGCGCAGCTCGCCGAGCTCTTCGAAAGCGCTGGGAATGTGGAGATGGTTGAGGTGATTTATGATAAGACTACTGGGAGAAGCAGGGGTTTTGGGTTTGTGACCATGTCTTCGGTTGAGGAGGTTGAAGCGGCTGCTCAGCAGTTCAATGGCTATGAACTTGATGGAAGGGCCTTGAAAGTGAATGCTGGACCACCCCCTGCTCGCAACGACAGTTCATCTCGTTTTAGAAGTTCTTCCAGAGGAGGAGGTGGTGGTGGTGGTGGTTTTTCAGATAGTGATAACAGAGTACATGTAGGTAATCTTGCTTGGGGTGTTGACAATGTAACACTCGAGACATTGTTTCGGGAACAAGGAAAGGTCTTGGAAGCTAGGGTAGTCTACGATAGGGACAGTGGACGATCAAGAGGCTTTGGGTTTGTGACTTATAGTAGTGCTGAAGAGGTCAGCAGTGCAATTCAGTCCTTGGATGGTGTGGACTTGAATGGTAGAGCTATACGAGTCTCGCTAGCAGATTCGAAGCCCAAGCGGTTTTGA 840 0.5286 MSTSAASLALPTLTLRTRHPLSSPQCFSSSLSLIPNAKPISISTVFLKPTFSLSSRFLPRVAVSSEFDQEEDTFSDGDGDGRGRFSPDLKLFVGNLPFSVDSAQLAELFESAGNVEMVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELDGRALKVNAGPPPARNDSSSRFRSSSRGGGGGGGGFSDSDNRVHVGNLAWGVDNVTLETLFREQGKVLEARVVYDRDSGRSRGFGFVTYSSAEEVSSAIQSLDGVDLNGRAIRVSLADSKPKRF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01022 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Spst7g01022 279 SMART rrm1_1 90 163 IPR000504 GO:0003723
Spst7g01022 279 SMART rrm1_1 197 270 IPR000504 GO:0003723
Spst7g01022 279 CDD RRM2_NsCP33_like 197 272 - -
Spst7g01022 279 Gene3D - 193 279 IPR012677 -
Spst7g01022 279 MobiDBLite consensus disorder prediction 159 193 - -
Spst7g01022 279 SUPERFAMILY RNA-binding domain, RBD 85 193 IPR035979 GO:0003676
Spst7g01022 279 FunFam Ribonucleoprotein A, chloroplastic 63 189 - -
Spst7g01022 279 FunFam 28 kDa ribonucleoprotein, chloroplastic 190 278 - -
Spst7g01022 279 SUPERFAMILY RNA-binding domain, RBD 193 278 IPR035979 GO:0003676
Spst7g01022 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Spst7g01022 279 PANTHER OS02G0815200 PROTEIN 24 275 - -
Spst7g01022 279 Gene3D - 63 192 IPR012677 -
Spst7g01022 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 161 IPR000504 GO:0003723
Spst7g01022 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01022 Spst-Chr7 18223961 18226125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01022 91 278 Eukaryotic Initiation Factors Gene Family AT1G49760 27.895 3.97e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01022 - - var:108324910 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01022 7 18223961 18226125 Spst7g01022 7 18223961 18226125 ECH
Spst1g02962 1 38192029 38197804 Spst7g01022 7 18223961 18226125 PCT