Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01015 ATGCTCCACACAACCTGCATTTTACTCTTCTTCTTCCTTCTGCCCTTGTTTTTGCCTCATGGAACTGCAACTCTCAACCTCACTCTCCCAGGGCAACATCCAGACCCGGAAGCTCTTGCAGCAGAAGTTCATAGGATGGTGAATGCTTCAATGGGAAGAAGGGAAATGCTGGTGGTGACAGAGAAAGAGGTGGCATCATGTCTGACAGGGAACCCCATTGATGATTGTTGGAAGTGTGACCCAAATTGGGCCAACAACAGACAGAGGCTAGCTGATTGTGCAATTGGGTTTGGGCAGAACGCAAAGGGTGGAAAAGGTGGGGAATTTTACATAGTTACTGATTCCTCTGATGACGACCCTGTGAACCCAAAACCTGGAACACTGAGATATGCAGTGATACAGAATGAACCACTGTGGATCGTGTTCCCCAGCAACATGATGATTGAGCTCTCTCAGGAACTCATTTTTAATAGCTACAAAACCATTGATGGGCGCGGCGCTGATGTGCACATTGTGGGTGGAGGTTGCATCACTCTTCAATATATTAACAATGTCATCATACACAACATTCACATCCACCATTGCCATCCCTCTGGTAACGCTAACGTGCGGTCGAGTCCAGAGCACTACGGGTACCGCACAGAATCGGACGGGGACGGAATCTCGATCTTCTCATCGCGCGACATCTGGATCGATCACTGCACGCTATCACGGTGCAAGGACGGTCTCATCGACGCTGTGATGGGGTCAACCGCAATAACGATCTCAAACAACCACTTCTCACACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCTCCCAGACTCGGCGATGCAGGTGACGATCGCGTTCAACCACTTCGGGGAGGATCTGGTGCAGCGCATGCCGCGTTGTAGACTAGGGTACATCCACGTGGTGAACAACGACTTTACGCGGTGGGAGATGTACGCGATCGGGGGAAGTGCGAGGCCTACGATTAACAGCCAGGGGAACCGATACACTGCGCCGGAGGATCCGTACGCGAAGCAGGTGACGAAGAGGCTGGACGCCGGGGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGATGTGATGCTGAACGGCGCGTTTTTCGTGGCCTCAGGAGGTGAGGCCGGAACTAACTACCAAAATGCGTACAGCGTGGAGCCTAAGAATGTAGATCGCATCTCGCTCCTCACCATGTCCGCTGGTGTTCTCGGCGTCGCCAGGGACAATAATCTGGGAATGTGGACGAGAGGACCCAATGATGGTGGTGTATATTTTTCAGACAATGGCCCAGAATACACAGGTGACATGTCCTGGAGTGCAATACCATTGCCACCTTCACCTATTTTCAATCTTCTATATGCATTTCTTGCTTTGTTGTGCCTCTTATTTAATACAACCACCTTAACAACACTTCTATAG 1443 0.5121 MLHTTCILLFFFLLPLFLPHGTATLNLTLPGQHPDPEALAAEVHRMVNASMGRREMLVVTEKEVASCLTGNPIDDCWKCDPNWANNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDDDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIELSQELIFNSYKTIDGRGADVHIVGGGCITLQYINNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEDLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSARPTINSQGNRYTAPEDPYAKQVTKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGEAGTNYQNAYSVEPKNVDRISLLTMSAGVLGVARDNNLGMWTRGPNDGGVYFSDNGPEYTGDMSWSAIPLPPSPIFNLLYAFLALLCLLFNTTTLTTLL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01015 480 Gene3D - 70 412 IPR012334 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Spst7g01015 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Spst7g01015 480 Pfam Pectate lyase 155 334 IPR002022 -
Spst7g01015 480 SMART amb_all 145 342 IPR002022 -
Spst7g01015 480 SUPERFAMILY Pectin lyase-like 58 390 IPR011050 -
Spst7g01015 480 PANTHER PECTATE LYASE 18-RELATED 33 414 IPR045032 GO:0030570
Spst7g01015 480 FunFam Pectate lyase 70 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01015 Spst-Chr7 17927757 17931854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01015 1 480 Polysaccharide Lyase AT3G53190 67.629 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01015 K01728 - gmx:100815062 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01015 7 17927757 17931854 Spst7g01015 7 17927757 17931854 ECH
Spst1g02855 1 37150092 37152317 Spst7g01015 7 17927757 17931854 PCT