Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01007 ATGCAGACTCAAGAGGAATTGCAAGTGGTTTCCAAGTTTCAGATGATGATCAAAGGCAAGCGCAACAAGCGTCAAAGAGCACCATCCCCTCTTAGGTTTGCCATGCCTACTTCAACCTCTACTAGCACTAACAATTCCATTGATAGTGCCACAAACTCAACCACCACCACCACCCCAGTTGAATCAATAGAAGAAGAAGACATGGCGAATTGTCTCATTCTCCTAGCTCAAGGAACAAACCACGTGGCAGCATCGACATCAGATCAAATCATCAACAACAAAAAGTCAACAAACCCACGAGTCTTCCAGTGCAAGACTTGCAGCAAATGCTTCCCTTCATTCCAATCACTTGGAGGACACAGAACCAGCCACAGGAAGCCCAACCACAACAACACTGTTGCAGAAGCAGTTACTACTACTTGTATTGGAGAGAATGATCCCCCGACAAGCACCACTCTCTCGTTGAAAACACCAAATAATAGGGTTGATATTTTGACCAGCACCAGCACTGTCGCCGCGACAAAAGCAAGAGTTCACCTGTGTTCCACCTGTGGTGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCATAGAAATCTTGTGAACACTTCTTCAACAACGTCTATGAGTGGTGATGGTGGTGGTAGCCAAGAATATCTAGAAGCTAAGAAACCCTTGAATTTGGACTTGAATCTTCCAGCACCAGATGAAGATCAAGGAGCATCAAAGTTTTCGTTTCAGCAAAGAGAAAACATCATTGTCTTCTCTACTTCTTTGGTGAATTGCAATCACTGA 807 0.4523 MQTQEELQVVSKFQMMIKGKRNKRQRAPSPLRFAMPTSTSTSTNNSIDSATNSTTTTTPVESIEEEDMANCLILLAQGTNHVAASTSDQIINNKKSTNPRVFQCKTCSKCFPSFQSLGGHRTSHRKPNHNNTVAEAVTTTCIGENDPPTSTTLSLKTPNNRVDILTSTSTVAATKARVHLCSTCGAEFSSGQALGGHMRRHRNLVNTSSTTSMSGDGGGSQEYLEAKKPLNLDLNLPAPDEDQGASKFSFQQRENIIVFSTSLVNCNH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01007 268 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Spst7g01007 268 Gene3D Classic Zinc Finger 100 201 - -
Spst7g01007 268 SUPERFAMILY beta-beta-alpha zinc fingers 100 201 IPR036236 -
Spst7g01007 268 SMART c2h2final6 102 124 IPR013087 -
Spst7g01007 268 SMART c2h2final6 179 201 IPR013087 -
Spst7g01007 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 201 IPR013087 -
Spst7g01007 268 Pfam C2H2-type zinc finger 178 202 - -
Spst7g01007 268 Pfam C2H2-type zinc finger 101 127 - -
Spst7g01007 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Spst7g01007 268 MobiDBLite consensus disorder prediction 19 62 - -
Spst7g01007 268 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Spst7g01007 268 MobiDBLite consensus disorder prediction 32 62 - -
Spst7g01007 268 PANTHER ZINC FINGER PROTEIN ZAT5 26 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01007 Spst-Chr7 17847371 17848177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g01007 11 268 C2H2 Transcription Factor Family AT5G03510 37.153 8.97e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst7g01007 zf-C2H2_6 4.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01007 - - pvu:PHAVU_007G151700g 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01007 7 17847371 17848177 Spst1g02850 1 37069961 37070776 ECH
Spst7g01007 7 17847371 17848177 Spst11g01279 11 37254791 37255720 ECH
Spst7g01007 7 17847371 17848177 Spst7g01007 7 17847371 17848177 ECH
Spst7g01007 7 17847371 17848177 Spst5g00494 5 3914287 3915228 ECH
Spst1g02850 1 37069961 37070776 Spst7g01007 7 17847371 17848177 PCT